RNA id: CI01000010_08187103_08253432.mRNA


Basic Information

Item Value
RNA id CI01000010_08187103_08253432.mRNA
length 2570
RNA type mRNA
GC content 0.50
exon number 8
gene id CI01000010_08187103_08253432
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 8187061 ~ 8253953 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAATGGACGCAGTTGAGGGGAAATAGTCTCTTGCTAACTTCAGAAATCCTCATCACTGACTAATAAAAATTTGAAACGGCACAGCGCAGCAACAAATCAGTATTCTCCAGCAGAGCCTGCAAGATATGGCCAAGAGGGTTAACCCTTTAGATGGCTGAACTGATTCTTTGAACAGCCACAATCTGCAAACAAATGACTTGAATTGATGAATTTTAATGGGTTATTTCAGGATCATTTTTAATAAATGGAGATCCTGAGATTCAAATGACTTTGACACTTTGACAGTCCCAAATTTTTGTAGCAGATAATGAAAACATTCGCCTACTTCCATTTACCTCAGAGGATTCCTTCCTAGTGTTTTAGATGTACAGACCAACCGAGAGACTTAACTAGTCTGAGATCCTCAGCTCGGATGATTAGCTTGGAAAGACTTTTTCTGGTCCAGAAAGGTTCAGAAAATCTTCTCAGGGCTGACTTTGCATATTTGATTCAGTAACAACGTATAGCCTCCAAATTAAAGATGGCTGCCGGAGTGGCAACATGGCTACCGTTTGCCAGGGCAGCGGCTGTTGGCTGGCTTCCTCTGGCCAAGAAGACCATGCCCAAACCGCCCGTGGACAAAAAGAGCCGCAACGACGAGATCCTCTTTGTAAACGTGAGCGGGCTCCGTTTCCAGACATGGAAAAACACGCTGGACCGCTATCCCGACACTCTGCTGGGCAGCTCGGAAAAGGAGTTTTTCTTCAACGAGGACACTCAGGAGTATTTCTTCGACAGGGACCCAGAGATGTTTCGCCACATTTTGAACTTCTACCGTACGGGTAAGCTTCACTACCCCCGGCAGGAGTGCATTCAGGCCTTCGATGAGGAGCTGGCGTTTTACGGCATCGTGCCGGACATTATCGGAGACTGCTGCATGGAAGAGTACAGGGACCGCAAGAAGGAGAACCAGGAGCGTCTGGCTGAGGACACAGAGGCCGAGATGGCGACAGACACCCCTCTGCCGCCTCACAGCACATCTCGGGAGCGCTTGTGGCGCGCCTTCGAGAACCCCCACACAAGCACCATGGCGCTCGTTTTCTACTACGTCACGGGTTTCTTCATCGCCGTCTCAGTTATAGCGAACGTAGTGGAAACTGTTCCATGCCGACCCCTCAAAGGCAGCAAGAAAGACTTGCCGTGTGGTGAGAAGTATTCGCTGGCGTTTTTCTGCATGGACACGGCCTGCGTGCTCATCTTCACGTTCGAGTACCTCATGAGGCTTTTCGCCGCGCCCAGCCGCTGCAAGTTCATGCGCTCAGTCATGAGCGTAATCGACGTTGTCGCCATCATGCCCTACTACATCGGCCTGGTCATGCCTGAGAACGAGGACGTGAGTGGCGCGTTTGTCACATTGAGGGTGTTCCGCGTCTTCCGGATCTTCAAGTTTTCACGTCACTCTCAGGGCCTGCGGATCCTGGGTTATACTCTGAAGAGCTGTGCTTCTGAGCTGGGCTTCCTCCTGTTTTCCCTTACCATGGCCATCATCATATTTGCAACCGTCATGTTCTACGCCGAGAAAGGCACCAAGGGAACCAACTTCACCAGCATCCCAGCCTCCTTCTGGTACACCATAGTCACCATGACAACACTTGGGTGTCTCGGGTTGTCTGACTCGGAGAGATCGCTCTTAAAAGCTCAAGTAGTGTCTCAAACATTCTGCCAATTCTACCACACTTCCAGCTTGTTGGAGTGGTCCGACAACGGTGCTGCAGTTACTCCAGCCATCGGCTCTGGGCCGTTCGCCAAGCAGCCGGCATCGTCTTGGGTTGCATTTGCCCCTCCTGAAACAGGGGTATGGTATGGAGACATGGTTCCAAACACCATCGCCGGAAAGATCTTCGGCTCTATCTGCTCTCTCAGTGGCGTGCTGGTTATCGCCCTTCCTGTACCCGTCATTGTATCTAACTTCAGCCGGATCTACCATCAGAACCAGAGAGCTGACAAGATGAGAGCCCAGCAGAAAGTCCGACTTGCGAGGATTCGCTTGGCCAAGAAGGGAACCACCAACGCCTTCCTACAATACAAAGAAGAAGGAGGATTTCAGTTTCGAGAGAGTGACAGTGCTCTGTGTCTGAAGAACAGATCTTCCTTTGAGCACCAACATCATCATCTGCTACATTGTCTGGAAAAGACAACCAATCATGAGTTCACAGATGAGCTGACGTTCAGTGAGATGTGTATGACTGAGTCAGTAGGCTATCGTACCAGCCGCAGCACTTCCATCTCCAGCCAGCAGGGGGTGACGACATCCTGCTGCCCACGCAGAGCTAAGAGAAGAGCCATCCGCCTCGCCAACTCCACCGTATCCGTCAGCCGGGGCAGCGTACAGGAGCTGGACACTCTGCAAGTGCATAAAACCTCTGCTGGAACACAAAGCTTCATAAAACAGTGTGAAGTGGTAAATTTAGTCATTGGTCAGGCACCTGCTCATTTTCGGCAGGGGGTTTTGGATGAAACGGCTCCTGGTAGAAGATTAAAGAGTTAGATATCAAAAGCACAGAGGTGTAAAGTCTATTCCACAAATAAA

Function

GO:

id name namespace
GO:0005267 potassium channel activity molecular_function

KEGG:

id description
K04891 KCND1, KV4.1; potassium voltage-gated channel Shal-related subfamily D member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74644 lncRNA downstream 53988 8132841 ~ 8133073 (-) True G65588
TU74626 lncRNA downstream 107483 8079248 ~ 8079578 (-) True G65570
TU74618 lncRNA downstream 120707 8065933 ~ 8066354 (-) True G65562
TU74608 lncRNA downstream 178119 8008451 ~ 8008942 (-) True G65552
TU74549 lncRNA downstream 370154 7816699 ~ 7816907 (-) True G65497
TU76289 lncRNA upstream 24517 8278470 ~ 8278673 (-) True G66955
TU76244 lncRNA upstream 34213 8288166 ~ 8290248 (-) False G66915
TU76241 lncRNA upstream 35412 8289365 ~ 8290248 (-) False G66915
TU76243 lncRNA upstream 35412 8289365 ~ 8290926 (-) False G66915
TU76242 lncRNA upstream 36394 8290347 ~ 8290926 (-) True G66915
CI01000010_08159110_08177308.mRNA mRNA downstream 9753 8159100 ~ 8177308 (-) True CI01000010_08159110_08177308
CI01000010_08093640_08128035.mRNA mRNA downstream 58414 8093410 ~ 8128647 (-) True CI01000010_08093640_08128035
CI01000010_08015262_08018732.mRNA mRNA downstream 168274 8013962 ~ 8018787 (-) True CI01000010_08015262_08018732
CI01000010_07953243_07995292.mRNA mRNA downstream 191769 7952912 ~ 7995292 (-) True CI01000010_07953243_07995292
CI01000010_07906951_07944215.mRNA mRNA downstream 242585 7906883 ~ 7944476 (-) True CI01000010_07906951_07944215
CI01000010_08293951_08338893.mRNA mRNA upstream 39717 8293670 ~ 8338893 (-) True CI01000010_08293951_08338893
CI01000010_08341936_08349855.mRNA mRNA upstream 87406 8341359 ~ 8349880 (-) True CI01000010_08341936_08349855
CI01000010_08381760_08382057.mRNA mRNA upstream 127500 8381453 ~ 8382323 (-) True CI01000010_08381760_08382057
CI01000010_08586563_08587030.mRNA mRNA upstream 332504 8586457 ~ 8587030 (-) True CI01000010_08586563_08587030
CI01000010_08624504_08629844.mRNA mRNA upstream 370389 8624342 ~ 8629844 (-) True CI01000010_08624504_08629844
TU74478 other downstream 288943 7842636 ~ 7873650 (-) True G65441
TU74496 other downstream 514718 7663691 ~ 7672343 (-) False G65453
TU73887 other downstream 2090581 6093689 ~ 6096480 (-) False G64918
TU73846 other downstream 2270050 5916257 ~ 5917011 (-) True G64877
TU73495 other downstream 2944135 5049155 ~ 5242926 (-) True G64564
TU76444 other upstream 387737 8641690 ~ 8674897 (-) True G67099
TU77386 other upstream 3675008 11928961 ~ 11932254 (-) True CI01000010_11929215_11933223
TU77396 other upstream 3710912 11968202 ~ 11968254 (-) True G67957

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00069585 False 2656 mRNA 0.51 7 NC_007119.7 9866351 ~ 9986978 (+)
bowfin (Amia calva) AMCG00009632 True 1119 mRNA 0.63 1 CM030126.1 43051273 ~ 43052391 (+)