RNA id: CI01000010_07906951_07944215.mRNA



Basic Information


Item Value
RNA id CI01000010_07906951_07944215.mRNA
length 1685
RNA type mRNA
GC content 0.48
exon number 11
gene id CI01000010_07906951_07944215
representative True

Chromosome Information


Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 7906883 ~ 7944476 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGCTACACTCCCCCCCAAGCATACTTTCTACTTCCTGTCACTCTCCATCTCTCCGTCTTTCCGCTTGGTTTGCTCTCATCCACAACCCTATTTGCAGGTGGACCATTGTGATCTGTCTAAATATTACTTCTCCTGCGTCCCCGGTGCTCCACGGCCCCCGGAGCTCCCATCCGTCAGGGCTGATGGAGGTGCGGGAGGCAGGAACGGCTCTCCCATGCAGAAGGCCTCAGTCTACGGCTGAAATATTGATCACAGCAACTCATGGAAGAGCTGCCACCCAAAGCCCGTGACAGCACTCGGGTCACTGTGACAAAGACGGAGGAGATCTTGGATAGCGTTCTTCAGGATGTTCCTCGCTGCCGTTTGTCGGATAATAACCTCGGTACGGTGGCCACCAGCATCCTCCTGCCCTCCGGACCACACAGCCCTCTCTACAGCTGGAGGTGCTACAACGTGGCTATTTATAACACGCAAACACATAGGGCTGTCACCGCACGCACTCTCGAGCGCATCAGATATATCCAGATAATTGTGATTGTCTCTGTCCGTTCGCTCTCAGTCAATGACAGCGGCGCCGCAGAGCAACAGGCCGAGATTACTGTAACAATCCTGTTATTCTGTCCTCTAATTAGGACGGGTCACTCTATTTACCAGTATGATGCAATTCATGTTGCGAATGGAACTCGGTCCATTTGCGCTCAGTCATTATTTTCTGGTTTAATGGGGGTGTCGAGGCAGGGTGTTTTTCAGTTGCTGGTGCTGGAGATTAGTAGGTGCTTATGGGACACAGTGTTCTGGCCTCCATACTTTACGTGGTTATCGTCAGAATCTGCACGTTGCTTAGCAACCCCACACTATTCATTTTGTGAGCTGGTATTCGCCCTGTCAGTGGAGGATAATGGGACATGTTCAGGTCTGTTGCAACCGAGGGCGTCTCGCAGTGCTATCACTCACAAGCCCGATGTGAATGGGAAGAACTTTCCAGAACAAAAGAAGCACGAGCCCAGAGAGCAGACAAAGGGGAAGGGTGTCTTGAATACTGTTGCGAAACCAAAGTCTGTACAGGCCACTTTCAAAATGCACTATTTCCCGGTAGAGGCAGATTTTTTTAAAGAGCATCTTCTGGCTCCCTGGGAAAACATCCCAATGAAAAATGGATGTTTTGCTCTGTGCTACCTGCGCTTTGAGTTGGCCGTGAGCCGGGGAACATTCCTGCCGCTGTCAGGGAAGGCTTTTGTTATTATTGTTTGTGTAAAAACCTTCATCCAAAATCTGTTGTTCCAGCAGATTCCGGAAAGCAATGCAGTCAGTGCGCCGCCTCAGGCCTTAAAACCATTAAAGCAAAGTAAACAAGAGAACTTCCTATTTACTGCTATTAATGCAGCTGTAATTATTCACTCCCAGATTATTCACTCCCAATACTTCCGCAATAACGAGCTCAAGAAGATTAATGATTGGACGGCCATTGTCCACAAAGTACATTCACTAATCATTGGAAGTGTTCCGATAAAGAGCTCATTTCCAATGAAAGAAGCACTTGACAGAGGCAATTTTGCTGTTTTAACGAACACTGTCGTTAACAGGCGTGAGATAAGAAACACAAGTGATTGCCCATAATGCCATCCTCAAACGCACGCTATTATGCTCTGTCATTAACCAAAATCTCATCTGCGTGATAGAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU74549 lncRNA downstream 89976 7816699 ~ 7816907 (-) True G65497
TU74534 lncRNA downstream 98114 7768507 ~ 7808769 (-) True G65482
TU74535 lncRNA downstream 137358 7769118 ~ 7769525 (-) True G65483
TU74490 lncRNA downstream 234766 7667972 ~ 7672117 (-) True G65453
TU74494 lncRNA downstream 243387 7659435 ~ 7663496 (-) False G65453
TU74608 lncRNA upstream 63975 8008451 ~ 8008942 (-) True G65552
TU74618 lncRNA upstream 121457 8065933 ~ 8066354 (-) True G65562
TU74626 lncRNA upstream 134772 8079248 ~ 8079578 (-) True G65570
TU74644 lncRNA upstream 188365 8132841 ~ 8133073 (-) True G65588
TU76289 lncRNA upstream 333994 8278470 ~ 8278673 (-) True G66955
CI01000010_07880416_07900104.mRNA mRNA downstream 6779 7880375 ~ 7900104 (-) False CI01000010_07880416_07900104
CI01000010_07784276_07792092.mRNA mRNA downstream 114791 7784276 ~ 7792092 (-) True CI01000010_07784276_07792092
CI01000010_07775590_07780861.mRNA mRNA downstream 125711 7775404 ~ 7781172 (-) True CI01000010_07775590_07780861
CI01000010_07758998_07771497.mRNA mRNA downstream 135061 7758422 ~ 7771822 (-) True CI01000010_07758998_07771497
CI01000010_07528012_07533124.mRNA mRNA downstream 373759 7527690 ~ 7533124 (-) True CI01000010_07528012_07533124
CI01000010_07953243_07995292.mRNA mRNA upstream 8436 7952912 ~ 7995292 (-) True CI01000010_07953243_07995292
CI01000010_08015262_08018732.mRNA mRNA upstream 69486 8013962 ~ 8018787 (-) True CI01000010_08015262_08018732
CI01000010_08093640_08128035.mRNA mRNA upstream 148934 8093410 ~ 8128647 (-) True CI01000010_08093640_08128035
CI01000010_08159110_08177308.mRNA mRNA upstream 214624 8159100 ~ 8177308 (-) True CI01000010_08159110_08177308
CI01000010_08187103_08253432.mRNA mRNA upstream 242585 8187061 ~ 8253953 (-) True CI01000010_08187103_08253432
TU74478 other downstream 8765 7842636 ~ 7873650 (-) True G65441
TU74496 other downstream 234540 7663691 ~ 7672343 (-) False G65453
TU73887 other downstream 1810403 6093689 ~ 6096480 (-) False G64918
TU73846 other downstream 1989872 5916257 ~ 5917011 (-) True G64877
TU73495 other downstream 2663957 5049155 ~ 5242926 (-) True G64564
TU76444 other upstream 697214 8641690 ~ 8674897 (-) True G67099
TU77386 other upstream 3984485 11928961 ~ 11932254 (-) True CI01000010_11929215_11933223
TU77396 other upstream 4020389 11968202 ~ 11968254 (-) True G67957

Expression Profile