RNA id: CI01000010_07775590_07780861.mRNA


Basic Information

Item Value
RNA id CI01000010_07775590_07780861.mRNA
length 860
RNA type mRNA
GC content 0.37
exon number 4
gene id CI01000010_07775590_07780861
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 7775404 ~ 7781172 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTCCTTCCAAACATACATGTTTGTTTTGTTTTTATATAAAATACAATCATTATGTAGCTCTTCAAGTATTCTACTTTTGAAAAAATAACAGCATACAGGTTTGGAAAGACATGAGGGTTTGGATTTTTTTTTTTTTTGGGGTGAACTATCTTTTTAACATTCTGTTTCTTAAATTTCATTGTCACTGACATACAGTACAGTAATTGTGATTGCATTTAGAAATGCTGTGCCTACTTATTCCCCTTGTCTTGCTTGTCAAGAACAGAAATAACTTGGAAATTACATTCCTTTAACTTTTGACATTCAGACATGGATCAGTTAACTCAGATAATGAAAGTAACAGGAACACCAGGTCCAGAATTTATTGAGAAACTTGAAAGCCCAGAGGCTAAGAGCTATATCAAATCCCTGCCCCACTACCCACGCAAAGATTTCTCTACATTGTTTCCCAGAGCCAGTAAAAAAGCGGTAGATCTGCTTGAGAAGATGCTGGTGTTAGATGCTGATGCTCGACTCACTGCTGATGGTGCATTGGCTCACAGTTATTTCGATGGCCTGAGGGACCCAGAGGACTGGCCAGAGCCCACGTCATACGATGACAGCTACGACAATGCCACATTGCCCTTAGAAGAGTGGAAACACACTGTAACCACTGTTACTGACTTCAGTTAAACACTTAAAGAAAGTTTTAGCATTGAGATATGTTTACCTACTTAAAATCAATATGAAATAAAAATCACAACCCATTTTACTTCAATAATCTGGTGTATTTCTGAGTGAAACAGGATATGCTACTAGTAAATTGTTTTCTGGCGTTGCCTGTTTTTCTAGCGGGATTTTTATCCAGTGGGAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74535 lncRNA downstream 5879 7769118 ~ 7769525 (-) True G65483
TU74490 lncRNA downstream 103287 7667972 ~ 7672117 (-) True G65453
TU74494 lncRNA downstream 111908 7659435 ~ 7663496 (-) False G65453
TU74460 lncRNA downstream 145098 7629315 ~ 7630306 (-) True G65427
TU74414 lncRNA downstream 264658 7510234 ~ 7510746 (-) True G65391
TU74549 lncRNA upstream 35527 7816699 ~ 7816907 (-) True G65497
TU74608 lncRNA upstream 227279 8008451 ~ 8008942 (-) True G65552
TU74618 lncRNA upstream 284761 8065933 ~ 8066354 (-) True G65562
TU74626 lncRNA upstream 298076 8079248 ~ 8079578 (-) True G65570
TU74644 lncRNA upstream 351669 8132841 ~ 8133073 (-) True G65588
CI01000010_07758998_07771497.mRNA mRNA downstream 3582 7758422 ~ 7771822 (-) True CI01000010_07758998_07771497
CI01000010_07528012_07533124.mRNA mRNA downstream 242280 7527690 ~ 7533124 (-) True CI01000010_07528012_07533124
CI01000010_07503276_07509080.mRNA mRNA downstream 265929 7502899 ~ 7509475 (-) True CI01000010_07503276_07509080
CI01000010_07409069_07441868.mRNA mRNA downstream 333536 7408497 ~ 7441868 (-) True CI01000010_07409069_07441868
CI01000010_07347866_07367517.mRNA mRNA downstream 407615 7347823 ~ 7367789 (-) True CI01000010_07347866_07367517
CI01000010_07784276_07792092.mRNA mRNA upstream 3104 7784276 ~ 7792092 (-) True CI01000010_07784276_07792092
CI01000010_07880416_07900104.mRNA mRNA upstream 99203 7880375 ~ 7900104 (-) False CI01000010_07880416_07900104
CI01000010_07906951_07944215.mRNA mRNA upstream 125711 7906883 ~ 7944476 (-) True CI01000010_07906951_07944215
CI01000010_07953243_07995292.mRNA mRNA upstream 171740 7952912 ~ 7995292 (-) True CI01000010_07953243_07995292
CI01000010_08015262_08018732.mRNA mRNA upstream 232790 8013962 ~ 8018787 (-) True CI01000010_08015262_08018732
TU74496 other downstream 103061 7663691 ~ 7672343 (-) False G65453
TU73887 other downstream 1678924 6093689 ~ 6096480 (-) False G64918
TU73846 other downstream 1858393 5916257 ~ 5917011 (-) True G64877
TU73495 other downstream 2532478 5049155 ~ 5242926 (-) True G64564
TU73132 other downstream 3161848 4613485 ~ 4613556 (-) True G64230
TU74478 other upstream 61464 7842636 ~ 7873650 (-) True G65441
TU76444 other upstream 860518 8641690 ~ 8674897 (-) True G67099
TU77386 other upstream 4147789 11928961 ~ 11932254 (-) True CI01000010_11929215_11933223
TU77396 other upstream 4183693 11968202 ~ 11968254 (-) True G67957

Expression Profile