RNA id: TU74494


Basic Information

Item Value
RNA id TU74494
length 2874
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G65453
representative False

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 7659435 ~ 7672343 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGACACTACTGGTATACATTACCTGGAACCACCTGATCTTCTGGTTTCCACTGCTCTCCTTCAATTTTGCGTAAGAACTCAGAAGGAGTGTTGGGGAATCTCTGGAAAGCCAGCTTCATGTACTTCTCTCTGATGGTCAGGGCACGGTACAGACCCTTACAGGCCAGCTCGAAGTCATCCATGGTCACCTGCAGTACAGTTAGGAAGAGTGTGATTGTGTGAAATGCCAAGTGCATTGCTCTGATTGTTATGTTTGAAATGCCTATATTTCTAATATGAAAAGTGATGTCAACATAAATACAGATGTACTAGAGCATTATGCTGACTGAGTGACACTATATTTAAAAGCAATCATCTCCCTGATGTCCTGCCAGGCCAGGGCAGATGAGTTTGATTCTTAGATAAGCAGGCAAGAACTGATGACTACAGGTGAAAATTAATTCCTTAAACCCTCCTTCTAAATGTCAGATACAGATATCAGAAACCAAATCCATGGCTGGGCTCCACCTGCTCAGATGGAGAGACCCCTTGGCTGATCTATTTCTGCTGGTCAGTTACCTGCAATGGTCTTGGTAAAGGGTAGTATAGGTCAAAACTTGCATAACGTGCATATCCCAGTCAGTTCCTGGAAGTTATAAACCGGAACATACCCCAGCAGCATAGTCACCAGTGATGGACACTCTCTGGAAGTGAGGCACTTCCAAATAAGTTGCTTTCTCCTCTAGCACAGGTTGACTGCGGCTGAGATACTTCTTCGCTTCTCTATGTCATCATTCTCGGCTACATGTAGGGCCAGCTCCTGGTTGAGGATAGGGCAATCATCAGCCACATCAAACAGGGATATCTCCTCACGGACGTCTTCATCTTTGGTTTCCGATGCAAATACACGCTCTGCGATCGCAATCATATGATCATCCGTTTCTGATTAAAAAAAAAAAAAAAAGCACCGCATTGGTTTTAATGCAAAATAATTATTTAAGGAGACGGCGGTCTACAAAAGCAAAAACAAAAAAAGAGAGAGAACATGACTAAAAAGCCCCAAAACTGTTAGGATGCATCAAGTGAGACGATGTTATGGTCTGGACATCATTTAAGTAGGCTATAAAAAATATTTTTTATATGGTAAACGCCATAAGGCACAATAAGTGAACAAGCAACTTGTACTTATTATAAAGCATCTAACTTGTTGTCCTTAAGACATTTTTAAGAACTTACACATTTATTGAACTTTTTAACCAGAACATGCTTTTGGCACAAGAAAAACACTTTTTCAGAATGATTCAACTACTGAGTCACTGTGACCCTAGCAGTGACTGAGCAAATTCTCCCATGCAGAGAAGAACAAAACTATGACAAATTGATTAAGCCAAGACACAAATCATAAAACTAACAGCACAACCCAAATCATAACTTAGAAATGTCTAATTGAAAACAGGCTTACATCCTAAAAGCTTTCAAGAATTACATTAAACATGCACAGATTCAGTCTAAGCCAGAAGTACACAATTTAGTCATTTGTTTGCTAATGATGAACTACAATGAGGTGCAAATGTTTTAGCTGAATACACATATTAATTACAAATTATATTGGCACTGCACAACAATTTGTTGTTTAACTGAATAACATGACTTAGTATTTAGCATGTCGACCTTTTGCTCTGACACTCGAGCAAGAAAATCTGTCCGTCTGCACAAAAATGATCAGTGTTGCAAATTTAAATATTTCTTATTTGTTTTACATTATAGCATTACGTTTAAATTTTCCTACAACAAAAAATGGTTACACTTTATTTTAAGGTGTATTAATTATTATTAGTTAACTACATGTACTTAATGTAGGTTTTGGGTTAATTGCATGTAATTATGCACAAATTATAGTAATTGCTATAACTACACTATAAAAAGTCACATTATGAATGCCAGATCTTCAATATAGTGGACATTTGGACCCCAATGTATATATTCACCTAAACAAACAAATGAATAAAACATACAGATAGATGTTTTGCCATTATTTTGCTGCACTGAAGCAATTTTAACATGTCGATCTTGGACGGGTTCCTTTATACTTACTCCCTCCTGATTATTCATTTCCCCCAGAGTGGGTGAGGAAGATCCAAAACATTGGAAAGAAAAAGGAGGTTATAGGTTAGACTGGGTTAGTAAGCAACACATTGGAACTGCCATTTTATTCACATTTGAGGGATCATACATGCCACCTGAATCACAAACAATTTTGTAATATTAAATAAAATGTCTCTGTATTGCAGGCAACCGAATTTTACAATAACAACGTCAATATGAACCTTTGTAACTTGCAGTGACGGATGGGGTAAAGTGAAAAGTACAAAATTACAGTAAAAAATAAAAAGAGTCATGCTCATTTTTTCACAATCCCACGATTGCGGACACCTTCAAAAGAACTCAAACAAGGCTTGACATTTCACAAACAGTGTATCACTATCTGTTCTCACATAGAGGCAAACTTTTATTTGTTATTGTTCACTTTCCATGATCATACAATGTTTTTCAACTGATTAATTCAAATCACAGATGGATTGGTCCTGTGGGGCCCTCTCTTGTTGCAATTGCAATACTTATTGAATAAATGTCATCACATATTTAATAACTGAAGCTCACTTGGAGGCCCCAAGCACCCACACCATTGGCCCGGACCTGAATCCACAAGGGCTGCGTCCAAAATTGCATACACTTTGAGTAGGTACTTGTTTTGAATAAGTAATTACTTCTCGGCCACTAAAAAGTATGTTCTATAAGTATGAATGTGTGTAGTATTAAAGGGTTCACCCAAAAATGAAAGTAATGTCATTAATTACTCACCCTCATGTCGTTCTACACCCGTAAGACCTTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74460 lncRNA downstream 29129 7629315 ~ 7630306 (-) True G65427
TU74414 lncRNA downstream 148689 7510234 ~ 7510746 (-) True G65391
TU74270 lncRNA downstream 205415 7447656 ~ 7454020 (-) True G65248
TU74286 lncRNA downstream 268806 7389960 ~ 7390629 (-) True G65264
TU74268 lncRNA downstream 311954 7347194 ~ 7347481 (-) True G65246
TU74490 lncRNA upstream 4476 7667972 ~ 7672117 (-) True G65453
TU74534 lncRNA upstream 105011 7768507 ~ 7808769 (-) True G65482
TU74535 lncRNA upstream 105622 7769118 ~ 7769525 (-) True G65483
TU74549 lncRNA upstream 153203 7816699 ~ 7816907 (-) True G65497
TU74608 lncRNA upstream 344955 8008451 ~ 8008942 (-) True G65552
CI01000010_07528012_07533124.mRNA mRNA downstream 126311 7527690 ~ 7533124 (-) True CI01000010_07528012_07533124
CI01000010_07503276_07509080.mRNA mRNA downstream 149960 7502899 ~ 7509475 (-) True CI01000010_07503276_07509080
CI01000010_07409069_07441868.mRNA mRNA downstream 217567 7408497 ~ 7441868 (-) True CI01000010_07409069_07441868
CI01000010_07347866_07367517.mRNA mRNA downstream 291646 7347823 ~ 7367789 (-) True CI01000010_07347866_07367517
CI01000010_07342174_07344454.mRNA mRNA downstream 314390 7342174 ~ 7345045 (-) True CI01000010_07342174_07344454
CI01000010_07758998_07771497.mRNA mRNA upstream 94926 7758422 ~ 7771822 (-) True CI01000010_07758998_07771497
CI01000010_07775590_07780861.mRNA mRNA upstream 111908 7775404 ~ 7781172 (-) True CI01000010_07775590_07780861
CI01000010_07784276_07792092.mRNA mRNA upstream 120780 7784276 ~ 7792092 (-) True CI01000010_07784276_07792092
CI01000010_07880416_07900104.mRNA mRNA upstream 216879 7880375 ~ 7900104 (-) False CI01000010_07880416_07900104
CI01000010_07906951_07944215.mRNA mRNA upstream 243387 7906883 ~ 7944476 (-) True CI01000010_07906951_07944215
TU73887 other downstream 1562955 6093689 ~ 6096480 (-) False G64918
TU73846 other downstream 1742424 5916257 ~ 5917011 (-) True G64877
TU73495 other downstream 2416509 5049155 ~ 5242926 (-) True G64564
TU73132 other downstream 3045879 4613485 ~ 4613556 (-) True G64230
TU73142 other downstream 3423019 4229950 ~ 4236416 (-) False G64237
TU74496 other upstream 195 7663691 ~ 7672343 (-) False G65453
TU74478 other upstream 179140 7842636 ~ 7873650 (-) True G65441
TU76444 other upstream 978194 8641690 ~ 8674897 (-) True G67099
TU77386 other upstream 4265465 11928961 ~ 11932254 (-) True CI01000010_11929215_11933223
TU77396 other upstream 4301369 11968202 ~ 11968254 (-) True G67957

Expression Profile