G65453


Basic Information

Item Value
gene id G65453
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 7659435 ~ 7672343 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU74494
GGGACACTACTGGTATACATTACCTGGAACCACCTGATCTTCTGGTTTCCACTGCTCTCCTTCAATTTTGCGTAAGAACTCAGAAGGAGTGTTGGGGAATCTCTGGAAAGCCAGCTTCATGTACTTCTCTCTGATGGTCAGGGCACGGTACAGACCCTTACAGGCCAGCTCGAAGTCATCCATGGTCACCTGCAGTACAGTTAGGAAGAGTGTGATTGTGTGAAATGCCAAGTGCATTGCTCTGATTGTTATGTTTGAAATGCCTATATTTCTAATATGAAAAGTGATGTCAACATAAATACAGATGTACTAGAGCATTATGCTGACTGAGTGACACTATATTTAAAAGCAATCATCTCCCTGATGTCCTGCCAGGCCAGGGCAGATGAGTTTGATTCTTAGATAAGCAGGCAAGAACTGATGACTACAGGTGAAAATTAATTCCTTAAACCCTCCTTCTAAATGTCAGATACAGATATCAGAAACCAAATCCATGGCTGGGCTCCACCTGCTCAGATGGAGAGACCCCTTGGCTGATCTATTTCTGCTGGTCAGTTACCTGCAATGGTCTTGGTAAAGGGTAGTATAGGTCAAAACTTGCATAACGTGCATATCCCAGTCAGTTCCTGGAAGTTATAAACCGGAACATACCCCAGCAGCATAGTCACCAGTGATGGACACTCTCTGGAAGTGAGGCACTTCCAAATAAGTTGCTTTCTCCTCTAGCACAGGTTGACTGCGGCTGAGATACTTCTTCGCTTCTCTATGTCATCATTCTCGGCTACATGTAGGGCCAGCTCCTGGTTGAGGATAGGGCAATCATCAGCCACATCAAACAGGGATATCTCCTCACGGACGTCTTCATCTTTGGTTTCCGATGCAAATACACGCTCTGCGATCGCAATCATATGATCATCCGTTTCTGATTAAAAAAAAAAAAAAAAGCACCGCATTGGTTTTAATGCAAAATAATTATTTAAGGAGACGGCGGTCTACAAAAGCAAAAACAAAAAAAGAGAGAGAACATGACTAAAAAGCCCCAAAACTGTTAGGATGCATCAAGTGAGACGATGTTATGGTCTGGACATCATTTAAGTAGGCTATAAAAAATATTTTTTATATGGTAAACGCCATAAGGCACAATAAGTGAACAAGCAACTTGTACTTATTATAAAGCATCTAACTTGTTGTCCTTAAGACATTTTTAAGAACTTACACATTTATTGAACTTTTTAACCAGAACATGCTTTTGGCACAAGAAAAACACTTTTTCAGAATGATTCAACTACTGAGTCACTGTGACCCTAGCAGTGACTGAGCAAATTCTCCCATGCAGAGAAGAACAAAACTATGACAAATTGATTAAGCCAAGACACAAATCATAAAACTAACAGCACAACCCAAATCATAACTTAGAAATGTCTAATTGAAAACAGGCTTACATCCTAAAAGCTTTCAAGAATTACATTAAACATGCACAGATTCAGTCTAAGCCAGAAGTACACAATTTAGTCATTTGTTTGCTAATGATGAACTACAATGAGGTGCAAATGTTTTAGCTGAATACACATATTAATTACAAATTATATTGGCACTGCACAACAATTTGTTGTTTAACTGAATAACATGACTTAGTATTTAGCATGTCGACCTTTTGCTCTGACACTCGAGCAAGAAAATCTGTCCGTCTGCACAAAAATGATCAGTGTTGCAAATTTAAATATTTCTTATTTGTTTTACATTATAGCATTACGTTTAAATTTTCCTACAACAAAAAATGGTTACACTTTATTTTAAGGTGTATTAATTATTATTAGTTAACTACATGTACTTAATGTAGGTTTTGGGTTAATTGCATGTAATTATGCACAAATTATAGTAATTGCTATAACTACACTATAAAAAGTCACATTATGAATGCCAGATCTTCAATATAGTGGACATTTGGACCCCAATGTATATATTCACCTAAACAAACAAATGAATAAAACATACAGATAGATGTTTTGCCATTATTTTGCTGCACTGAAGCAATTTTAACATGTCGATCTTGGACGGGTTCCTTTATACTTACTCCCTCCTGATTATTCATTTCCCCCAGAGTGGGTGAGGAAGATCCAAAACATTGGAAAGAAAAAGGAGGTTATAGGTTAGACTGGGTTAGTAAGCAACACATTGGAACTGCCATTTTATTCACATTTGAGGGATCATACATGCCACCTGAATCACAAACAATTTTGTAATATTAAATAAAATGTCTCTGTATTGCAGGCAACCGAATTTTACAATAACAACGTCAATATGAACCTTTGTAACTTGCAGTGACGGATGGGGTAAAGTGAAAAGTACAAAATTACAGTAAAAAATAAAAAGAGTCATGCTCATTTTTTCACAATCCCACGATTGCGGACACCTTCAAAAGAACTCAAACAAGGCTTGACATTTCACAAACAGTGTATCACTATCTGTTCTCACATAGAGGCAAACTTTTATTTGTTATTGTTCACTTTCCATGATCATACAATGTTTTTCAACTGATTAATTCAAATCACAGATGGATTGGTCCTGTGGGGCCCTCTCTTGTTGCAATTGCAATACTTATTGAATAAATGTCATCACATATTTAATAACTGAAGCTCACTTGGAGGCCCCAAGCACCCACACCATTGGCCCGGACCTGAATCCACAAGGGCTGCGTCCAAAATTGCATACACTTTGAGTAGGTACTTGTTTTGAATAAGTAATTACTTCTCGGCCACTAAAAAGTATGTTCTATAAGTATGAATGTGTGTAGTATTAAAGGGTTCACCCAAAAATGAAAGTAATGTCATTAATTACTCACCCTCATGTCGTTCTACACCCGTAAGACCTTCG
>TU74496
ATTTGAAAATGGACTAATCTTTTAACCTTTGGTCTCAATGTATGGAAAAGGGCAGCATCTGCATAGCATCTTATACATGAGGAACGACATGAGGTTAAGTAAATGATGACAGAATTGTCAATTTTGTGTTCAGTTCAATTCACATTTATAGTGTTATAAGTGTTATAACTATAAGAACAAAAATCAAAACAGAATATATATTTAAATATAGATTTTGTTTATTGAGTCAACTGTAACAGGCTTTTTTCCAAAGCATGAACACTAAAAAACATAATACAATAAGGCACAAAGGGGATGTAAACTTAGTAAACTGCAAACTGCAGTAAGACCTAAAGGTCAGACTTAAGATAAACTGCTCAAGCCGACAGACACCTTTGTACAAGAAGACTCTGTTCTGGAGTGTCATTTCACATTAAGATATAAGTCTCATGGATGTTATCTCATGGGCTTCACAATAATGATAGCAGAAATGTTGTTGTCACTGACAATTTAAGGACAGTGCAAAACAAACACTTTGCATGTGTGCATGTTTGTTTAGTCACCCATCACGCCCTCTCTAATGAGGTTCAGCTCATAGCACTGAGTCTCGTAGCGGAAGGCCATGCGAATCTGAGCCACGTTGGTTTTGCGGATGTCGTTGCCCGCTGGACCGTCCTTCAAGTAGTTGGCACCAAGGAAGTGAATCTTCCTCAGCAGATAGGCCGCTCTGGAGGACACTGTTCCTGGCAATCTCGCACATGTCACAGGTGCTGAGCTTGAACACCTGGGCTGCAATGGCATACTCTTCCATCAGGGGCTCCTATTGATGCAGGAAATAAGACGAACGCAAAGACATGATAAAATCAAAGGAAATAGAGGGAGAAGATTTGCAGTTTGCACATATGAAAAGGGGAGAAGACTCGCACCTTGGTGTAGTGGAACTGCATGGGGTCATCGGTGGACAGGGAGACCATCAGTCCCTTCTTGTGGAACTCCAGCAGAGGGCTCTTGTTGTATTCTAGGAACAGACTGTTGTTGCTGAGTGGGGACATGGCAATGGGAACCTGGGCCAGGTAATACAGGTACTGCAGGACAGGGCTCTTCTTGAGGTTAAGGCCGTGAGAGATGTTGTCTGCAGTCATAAAGCAGGCCAACAGGTGAGTGACAGCTCCAGCCTCTCCACAATGAGGTCTGAACTGGAATGTGTTCATACCTCTTTCCTTGCGCAGCTGGTTGAGTCGGGCAATGTTTGCATACATGTAGTAAATCCAGTAAGTGTATGAGGGGTTCTTCTCAATGTCCCACTCCTCCGGCTTGGGGCTCTTTTTGGAGAACATGTGACCGCTGTGTTTAGATTCATCATCCACACTGTCAAAACCTGTCACATGCTTCAAGAAGACACTAAGCTCTGGGTTGGAGTTTGGGTCAATGGTGGCCTGGAAAACAGGAAGGAAGATGTTTTCCAGCATCTTCCCAAAGTGTGGCACAAAGTTCCTGGCTCTAAAAATGTCATAGATTCTGGGCACTTGAATCATCCACTTGAGCTGAGGAGAAAAGACTCTGTGCTTGTTGAACCAGCTGGAAAGCTTAGTCCACTCATTAGGGTTACAGCCATAGATGGACAGACGAGGCTCTGCGTACTGGTATCTGGCATCCTCCAGGTCACTAGCAACTTCCTGTGAGATTCCAGAGATTAAAGCTGGTTTGATTGGTTTCCTGTTCGTGTACATGAGTAATGCCATGGTCCACCCTAGTCTTACCTTGATAATGGTGGCAAAATACTCTCCAGATATGTGGTTCTCAGTCTTCAGATAAAGATCACGCAGCTCACTGGCACCCACAGGGTTGTACTTGGCATTGAATTTATCAAAACGCTGGAAGGTTTGTCTGCCAGCATGCACATCCAGGGAATCTACAGTCAGGTCATAGGGGTGCAGATGAAGAGATTCAAAAAGCTCCTTCATGGTAACTTCCTTGCCCTTCAAAACATGCACCACCCGATCTGAATCCACACGGTAGGTCTTCTTGATGAAGCGGAGAAGGTGCTTCTGGTTCATGCAGGCGGCAGCATGGATGTGAGTATCAACCTTTCTACAGTTGTAAAAGTCTCTGTGGGGATTTTTCTTCAGCTCTTTCATTTCCTCCATCTCGTTTAACATCTCATGTACATTGAATTTTGACATGAGGAACTTCAGACGACGATGAGTGTATGACTTTGTTGGGCCCTGAGCAATCAAGGCAATGAGGAAGTTCATGTCGTCGATGAAAGTGGCAAGGTCTGGACCGGGATGGTTCAGAGGCTGGTTTTTATCAGCAGATGCTGCATCTTTGTAGACATAGATAACACCATCCTTCATGCGAGCAACGTAGCCAAGGTCAGGTGGGAAGTCCTTTGTGCAGAAAGGATCCTCACCAGCTTTAGGAGGAGAGGTAAAGACTGCAACACAACAGAGACTGTTATGTGGTTATGTTTCACTGAATTTAACAAATACAACTTGTTTTTCCATTTTTCAGTTACCAAACATTAATATTGTCATATTCATTACTATGTCAAACCCTCAG
>TU74490
TCAACTGTAACAGGCTTTTTTCCAAAGCATGAACACTAAAAAACATAATACAATAAGGCACAAAGGGGATGTAAACTTAGTAAACTGCAAACTGCAGTAAGACCTAAAGGTCAGACTTAAGATAAACTGCTCAAGCCGACAGACACCTTTGTACAAGAAGACTCTGTTCTGGAGTGTCATTTCACATTAAGATATAAGTCTCATGGATGTTATCTCATGGGCTTCACAATAATGATAGCAGAAATGTTGTTGTCACTGACAATTTAAGGACAGTGCAAAACAAACACTTTGCATGTGTGCATGTTTGTTTAGTCACCCATCACGCCCTCTCTAATGAGGTTCAGCTCATAGCACTGAGTCTCGTAGCGGAAGGCCATGCGAATCTGAGCCACGTTGGTTTTGCGGATGTCGTTGCCCGCTGGACCGTCCTTCAAGTAGTTGGCACCAAGGAAGTGAATCTTTTCCTCAGATAGGCCGCTCTGGAGGACACTGTTCCTGGCAATCTCGCACATGTCACAGGTGCTGAGCTTGAACACCTGGGCTGCAATGGCATACTCTTCCATCAGGGGGCACCTTGGTGTAGTGGAACTGCATGGGGTCATCGGTGGACAGGGAGACCATCAGTCCCTTCTTGTGGAACTCCAGCAGAGGGCTCTTGTTGTATTCTAGGAACAGACTGTTGTTGCTGAGTGGGGACATGGCAATGGGAACCTGGGCCAGGTAATACAGGTACTGCAGGACAGGGCTCTGTGGGACATGAGGAGACAGTGACTGTTGCGTTTGTGTCAACATCATTATTTTTCGAAGACTGAGATGAAGTGGTAAGGTGAAGGATGCCCCCTAATGGTCAGGGTAAATGGTGTATTAACCTTCTTGAGGTTAAGGCCGTGAGAGATGTTGTCTGCAGTCATAAAGCAGGCCAACAGGTGAGTGACAGCTCCAGCCTCTCCACAATGAGGTCTGAACTGGAATGTGTTCATACCTCTTTCCCTTGATGCCACAAACACACAAGATACAGTTACTCTGGGCTCTATAAACACTACCGTTAAAAAAAAAAAACAAAGTAATGCTTTTATTCAGCAAGGATGCATTAAAATAATCAAATGTGACCGTAAAGCCACAAATGTTCTGTTCTTTTTGAACTTTCCATTCATCAAAGAGTCCTAAAAAAAATCATTCAATTCTGCTGTAAGACATCTCTAAAAGACAATAGTGTCACTATTCAGCTGAAGTCAGTTCAGTGTTGATTAAGTGAAATAACTGGGAAAAGTTTATCAATTATGAATGAGTTCAATTCAGCCATAAAGCAGCTCTGCAGAAAACAGTGATATCATCATCAGCTCAGTTCAGTTCTCATCCAATAGTGTCAGTGCAGTCAAATCAATATATTGCTGAATATTAACTGTCAGCAAGTAAAAAAGTAATAGCATACTTCTCCTTGCAAGCTGTACAATGTGAGGTATTAGTCATGTCCATGGGACAAACAGTGTGGAGATGTATTATAAACCAAAGTTTCATACTTTTGGGTTAGGGATCGAAACAAACCCCTAACTTCAATTATAAGCAATTGTAATAAAAAAAAATGGTGTCATTGAAATACTCACTTGCGCAGCTGGTTGAGTCGGGCAATGTTTGCATACATGTAGTAAATCCAGTAAGTGTATGAGGGGTTCTTCTCAATGTCCCACTCCTCCGGCTTGGGGCTCTTTTTGGAGAACATGTGACCGCTGTGTTTAGATTCATCATCCACACTGTCAAAACCTGTCACCTGCAGAGGGACGAAACATGGGAATGGAGGGATTAACAGACTACAGTAATATTGTGAAATATTATTACAATTTAAAATAATTGTTCTATTTTATAGAATATTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU74494 False 2874 lncRNA 0.38 2 7659435 7663496
TU74496 False 2541 TUCP 0.44 9 7663691 7672343
TU74490 True 1872 lncRNA 0.42 3 7667972 7672117

Neighbor

gene id symbol gene type direction distance location
CI01000010_07528012_07533124 FXN coding downstream 126311 7527690 ~ 7533124 (-)
CI01000010_07503276_07509080 NA coding downstream 149960 7502899 ~ 7509475 (-)
CI01000010_07409069_07441868 NA coding downstream 217567 7408497 ~ 7441868 (-)
CI01000010_07347866_07367517 IFT81 coding downstream 291646 7347823 ~ 7367789 (-)
CI01000010_07342174_07344454 NA coding downstream 314390 7342174 ~ 7345045 (-)
CI01000010_07758998_07771497 BRPF3, BRPF3B coding upstream 86305 7758422 ~ 7771822 (-)
CI01000010_07775590_07780861 NA coding upstream 103287 7775404 ~ 7781172 (-)
CI01000010_07784276_07792092 MK13, MAPK13 coding upstream 112159 7784276 ~ 7792092 (-)
CI01000010_07880416_07900104 NA coding upstream 208258 7880375 ~ 7900104 (-)
CI01000010_07906951_07944215 NA coding upstream 234766 7906883 ~ 7944476 (-)
G65427 NA non-coding downstream 29129 7629315 ~ 7630306 (-)
G65391 NA non-coding downstream 148689 7510234 ~ 7510746 (-)
G65248 NA non-coding downstream 205415 7447656 ~ 7454020 (-)
G65264 NA non-coding downstream 268806 7389960 ~ 7390629 (-)
G65246 NA non-coding downstream 311954 7347194 ~ 7347481 (-)
G65482 NA non-coding upstream 96390 7768507 ~ 7808769 (-)
G65483 NA non-coding upstream 97001 7769118 ~ 7769525 (-)
G65497 NA non-coding upstream 144582 7816699 ~ 7816907 (-)
G65552 NA non-coding upstream 336334 8008451 ~ 8008942 (-)
G65562 NA non-coding upstream 393816 8065933 ~ 8066354 (-)
G64918 NA other downstream 1562955 6093689 ~ 6096480 (-)
G64877 NA other downstream 1742424 5916257 ~ 5917011 (-)
G64564 NA other downstream 2416509 5049155 ~ 5242926 (-)
CI01000010_04612793_04613017 SMIM15 other downstream 3045879 4612460 ~ 4613135 (-)
G64237 NA other downstream 3423019 4229950 ~ 4236416 (-)
G67099 NA other upstream 969573 8641690 ~ 8674897 (-)
CI01000010_11929215_11933223 DYNLL6, DYNLL1, DYNLL2A, DYNLL2, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L other upstream 4256844 11928448 ~ 11933343 (-)
CI01000010_11965317_11969111 NA other upstream 4292748 11964865 ~ 11969710 (-)

Expression


Co-expression Network