CI01000010_07347866_07367517 (IFT81)


Basic Information

Item Value
gene id CI01000010_07347866_07367517
gene name IFT81
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 7347823 ~ 7367789 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_07347866_07367517.mRNA
AACTTCCTGTTAGCAACCAGGCCTTGTGTGACAACGGTTCCTAGGCAGGATTTGTTGCTGTTAGCGGTACACGCAGTTATACAGTTCATACAAATATTTGTTAGCATTTTCATTTAGCTAAAGTCAAATAAAAAACGACATTCTGTGACAGCGCTCCGAGAACTATAATAAAATTATTAGTTCGACAATTAGCTAGTTCAAAAGTCATATTTTTTAACGAATCGCAAGCTAGTCAGGTTTTTTTGTTGGGTTGAAGTCACAAACTCTTCAAGATGAGCGAACAGCTCAAATTTATCGTTGAACAGCTGAACAGGGAGCCTTTTAAGAAAAACTTCAATCTCATTACCTTCGATTCTTTGGAGCCAATGCAGTTACTGCAGACTTTAAATGATGTTCTGGCTGAAATTGACCCAAAGCAAGCCATCGACATACGTGAGGAAATGCCCGAGCAGACAGCCAAGAGAATGTTTACTCTTTTGGGGATGCTGAAATACAAACCACCTGGAGGAATGTCTGAAGTAAGCAGTTTTCGTCAGGGTTTGGTGGCAGGCAGTAAGCCTGTGGTGCACCCCATCTTGCACTGGCTGTTACAGAGGATTCCAGAGCTGAAGAAGAGAGCATATCTGGCCAGATTCCTCGTCAAACTAGAGGTTCCTGCTGAGTTTCTTCAAGATGATATCATTGCTGAGACCTACCACCAGTATGAGGAGCTGGTGGAGGGATTCAAGAACATCCATAAAGAGTGTGAACAGCTGAAGAGCTCAGGTTTCTCCACCGCTGAGATCCGGCGGGACATTGTTGCAATGGAGGAGGAGAAGGACCAACTCATCAAAAGGGTGGAGCGTCTTAGAAAGAGGGTGGAGGCAGTGTCAAACCACCAGCGCATGCTGGAGCTGGCCAGACAGTTAAGAGTGGAAAAAGAAAGAGAAGAGTCTATTGCTCATCAGAAACAGGAGCAGAAAAACCAGCTCTTCCAGGCAGAGCAGAGACTGCAGAGATCTCAGATCCAGCTCAAAGACTTGCAGCAGGCAGCCGCAGACGAAAAGCCAGAGAGCCTCATGAAGAGACTTGAGGAGGACATCAAGTTCAACTCCTACATGGTGTCTGAGAAGCTGCCCAAAGAGTTGGAGAACATGAGAAAGGTGGTGCAGTACCTACAGAAGGTGGCGTCTGAGCCTGCTATGGGACAAGCAGAGCTGAGGGAGCTGGAGGACAAGATCAGAGAAACCAACACAGAGATCAACCATCTGATCGAAAAGAAGATGATGCGTAATGACCCAATGGATGATAAACTCTCTCTGTTCAGACAGCAGGCTGCTATTATAGTCCATAAAAAGGAAACCAAGGTGGAGGAGTTGCAGGAGGCCCGTGAGGAGCTGGCAGCTGTGGAAAGAGAACTGAACATGAAGAGCAGTCAGGCACGAGAGCGAGGTGGAGCGGAGCTGATCCGTGGAGATGAGCGATATGTGGCCAAGATGCGTGGCAAGAGTAGCACGTATAAGAAGAAACGTCAGGAGATTGCTGAGCTGAAGGCAGAGTACGGCGTTCTACAGAGGACTGAAGAGATCCTGAGAGAACGACACACAGCTGGACATCAACAGCTGCAATCTCTGGAGGCTCAGCGGGGGATCTCAGGCTACAGTGATACTCAGGAAGAGCTGGAGAGAGTCTCCGCTATCAAGAGCGAACTGGACGAGATGAAGGGACGAACACTGGACGACATGTCTGAAATGGTAAAAAAGCTGAATTCAGTGATAGCACAAAAGAAGTCTGCTTTATCTCCACTGATAAAGGACCTGAGAGCTCTGAGACAGGAACATGCGGAGCTCGCTCCAGAGTATGAGCAAAAAAAGGCTCAGTATGACACCTGTGCTGCAGGACTGGAGAGCAACAGATCCAAGCTGGAACAGGAAGTGAGGACACTCAGGGAAGAAACGGCACAGGAAGAAAGCCGATATCATTACATTAACTGCGTGAGAGAGATTACTGAGAGTCAAATGCAAAGAGCAGCAGAGCAGAGTAAGATCAATCAGTCAATGGACTTACAGGTGCGGAGGACGGCTCTCAGAGAGAAGTACATTGCGAACACAGCTGAGCAGGAGTCCTTGGGCAAGTTAGCATCAGAACATGCAGCTCTAGATGTGTTTTTCAAAGCCAATGTACATTGTGTCTCTGTGGACTTGCAGGTTCTACGTCAGCAGGTGAAACAGGTGCGAGAGAACCAGGAGCCCAATATGAGACAGATGAAGATGTGGAAGGACCTGGAGACGCTGTTGGAGTGCAAGAAGCAGTGCTACCTCAAGGCTCAGAGCCAGGCGCCTATTGGGCACATCATCCAGGATGTTGGCAAGGATATGCTGGTTCTGTGATGCCATTTCCCATGTAAAAGTTGTCTTTCTGGTCATTAATATA

Function

symbol description
ift81 Predicted to enable tubulin binding activity. Acts upstream of or within pronephros development and regulation of TOR signaling. Predicted to be located in motile cilium. Predicted to be part of intraciliary transport particle B. Predicted to be active in centrosome and cilium. Is expressed in notochord; otic vesicle; pronephric duct; and ventricular system. Human ortholog(s) of this gene implicated in short-rib thoracic dysplasia 19 with or without polydactyly. Orthologous to human IFT81 (intraflagellar transport 81).

NR:

description
Intraflagellar transport 81 homolog

GO:

id name namespace
GO:0030992 intraciliary transport particle B cellular_component

KEGG:

id description
K19677 IFT81; intraflagellar transport protein 81

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_07347866_07367517.mRNA True 2412 mRNA 0.48 18 7347823 7367789

Neighbor

gene id symbol gene type direction distance location
CI01000010_07342174_07344454 NA coding downstream 2778 7342174 ~ 7345045 (-)
CI01000010_07337002_07341920 NA coding downstream 5903 7336613 ~ 7341920 (-)
CI01000010_07320443_07334877 ATP2A2.S, ATP2A2B, ATP2A2A, ATP2A2 coding downstream 12830 7319816 ~ 7334993 (-)
CI01000010_07135276_07196633 NTNG2A, NTNG2 coding downstream 151190 7134391 ~ 7200800 (-)
CI01000010_07128701_07132022 ENDOG coding downstream 215755 7128662 ~ 7132068 (-)
CI01000010_07409069_07441868 NA coding upstream 40708 7408497 ~ 7441868 (-)
CI01000010_07503276_07509080 NA coding upstream 135110 7502899 ~ 7509475 (-)
CI01000010_07528012_07533124 FXN coding upstream 159901 7527690 ~ 7533124 (-)
CI01000010_07758998_07771497 BRPF3, BRPF3B coding upstream 390633 7758422 ~ 7771822 (-)
CI01000010_07775590_07780861 NA coding upstream 407615 7775404 ~ 7781172 (-)
G65246 NA non-coding downstream 342 7347194 ~ 7347481 (-)
G65238 NA non-coding downstream 1155 7345614 ~ 7346668 (-)
G65364 NA non-coding downstream 72711 7274411 ~ 7275112 (-)
G65359 NA non-coding downstream 77240 7270219 ~ 7270583 (-)
G65336 NA non-coding downstream 79747 7237333 ~ 7268076 (-)
G65264 NA non-coding upstream 22171 7389960 ~ 7390629 (-)
G65248 NA non-coding upstream 79867 7447656 ~ 7454020 (-)
G65391 NA non-coding upstream 142445 7510234 ~ 7510746 (-)
G65427 NA non-coding upstream 261526 7629315 ~ 7630306 (-)
G65453 NA non-coding upstream 291646 7659435 ~ 7672343 (-)
G64918 NA other downstream 1251343 6093689 ~ 6096480 (-)
G64877 NA other downstream 1430812 5916257 ~ 5917011 (-)
G64564 NA other downstream 2104897 5049155 ~ 5242926 (-)
CI01000010_04612793_04613017 SMIM15 other downstream 2734267 4612460 ~ 4613135 (-)
G64237 NA other downstream 3111407 4229950 ~ 4236416 (-)
CI01000010_07880416_07900104 NA other upstream 474847 7880375 ~ 7900104 (-)
G67099 NA other upstream 1273901 8641690 ~ 8674897 (-)
CI01000010_11929215_11933223 DYNLL6, DYNLL1, DYNLL2A, DYNLL2, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L other upstream 4561172 11928448 ~ 11933343 (-)
CI01000010_11965317_11969111 NA other upstream 4597076 11964865 ~ 11969710 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location