RNA id: TU73132


Basic Information

Item Value
RNA id TU73132
length 72
RNA type TUCP
GC content 0.46
exon number 1
gene id G64230
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 4613485 ~ 4613556 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGCTAGTGTTTCCGCGTCCGGCGACAGCTACCAACTAATAACTGCTCGGTAAATATAGAACGGTTTATCTGGATTAGGATTTCCGAGGACGATGATTGATATCAAAGCATGGGCAGAATATGTGGTGGAGTGGGCAGCCAAAGATCCCTATGGCTTTCTTACCACGGTTATCCTGGCATTGACCCCTCTGTTTATCGCCAGCGCCCTGTTATCATGGAAACTCGCCAAGATGATCGAGGCCAAGGAGCGTGAGCAGAAAAAGAAACAAAAACGACAAGAGAACATTGCCAAAGCCAAGAGAGCCAAGAAGGATTGAGCTTGGGACAGAGAGGGGTCAACATAATAGTCCAGTCCCCTGATGTATGGCTCCTCTCTTAACCACGGACAGTTCTTATGGGACCTGGAGCAAGACTGGGTCTGGAGGCCTTAGTAAACCCTTAGAGGAAACATAATGGGAGGGTTGATTGCTTGATCTCAGTAGCAGGACTGCAGTACTTTTCCAGGATATTATCAATACAGTGGAAAATGCACTTCATTATTGTGCTATCCACTACTGTGCAGTACTCTGCATTCCATTTTTTATTGGGTTGATTGTTTTTTCCAAGTTGAATCC

Function

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73327 lncRNA downstream 34402 4577744 ~ 4578094 (-) True G64411
TU73193 lncRNA downstream 90850 4504393 ~ 4521646 (-) True G64280
TU73194 lncRNA downstream 175222 4437197 ~ 4437274 (-) True G64281
TU73187 lncRNA downstream 178355 4432907 ~ 4434141 (-) False CI01000010_04433165_04436747
TU73295 lncRNA downstream 329411 4282756 ~ 4283085 (-) True G64382
TU73336 lncRNA upstream 609 4614165 ~ 4615086 (-) True G64418
TU73341 lncRNA upstream 29333 4642889 ~ 4644040 (-) True G64421
TU73160 lncRNA upstream 67108 4680664 ~ 4681232 (-) True G64249
TU73135 lncRNA upstream 76716 4690272 ~ 4692617 (-) True G64231
TU73349 lncRNA upstream 111261 4724817 ~ 4744762 (-) True G64428
CI01000010_04597295_04608873.mRNA mRNA downstream 3511 4597276 ~ 4608985 (-) True CI01000010_04597295_04608873
CI01000010_04590937_04594873.mRNA mRNA downstream 16641 4590176 ~ 4595855 (-) True CI01000010_04590937_04594873
CI01000010_04559649_04573405.mRNA mRNA downstream 38517 4559620 ~ 4573979 (-) True CI01000010_04559649_04573405
CI01000010_04496312_04498116.mRNA mRNA downstream 114305 4495851 ~ 4498191 (-) True CI01000010_04496312_04498116
CI01000010_04445984_04469908.mRNA mRNA downstream 142207 4445560 ~ 4470289 (-) True CI01000010_04445984_04469908
CI01000010_04631540_04638983.mRNA mRNA upstream 17922 4631478 ~ 4639007 (-) True CI01000010_04631540_04638983
CI01000010_04777992_04782638.mRNA mRNA upstream 164308 4777864 ~ 4782672 (-) True CI01000010_04777992_04782638
CI01000010_04958548_04988116.mRNA mRNA upstream 344203 4957759 ~ 4988920 (-) True CI01000010_04958548_04988116
CI01000010_04997746_05004248.mRNA mRNA upstream 383830 4997386 ~ 5004248 (-) True CI01000010_04997746_05004248
CI01000010_05151648_05156807.mRNA mRNA upstream 537830 5151386 ~ 5157078 (-) True CI01000010_05151648_05156807
TU73142 other downstream 376080 4229950 ~ 4236416 (-) False G64237
TU72970 other downstream 712585 3899741 ~ 3899911 (-) False G64080
TU72971 other downstream 712585 3899741 ~ 3899911 (-) True G64080
TU71288 other downstream 1080844 3531516 ~ 3531652 (-) True G62599
TU70569 other downstream 3067445 1424425 ~ 1545051 (-) True G61965
TU73495 other upstream 435599 5049155 ~ 5242926 (-) True G64564
TU73846 other upstream 1302701 5916257 ~ 5917011 (-) True G64877
TU73887 other upstream 1480133 6093689 ~ 6096480 (-) False G64918
TU74496 other upstream 3050135 7663691 ~ 7672343 (-) False G65453
TU74478 other upstream 3229080 7842636 ~ 7873650 (-) True G65441

Expression Profile