CI01000010_04559649_04573405


Basic Information

Item Value
gene id CI01000010_04559649_04573405
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 4559620 ~ 4573979 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_04559649_04573405.mRNA
AAAATGGTAGCACCCAACGGGTTATTTAACACAAACAGGTTGGTGGCAGTGATTAATGATCTGAGCTGTGAACCAGCGGTTGTCCAAGATTGAAACCCCAGAAGGAGTGACCCATGAACTGGAGTGTTGCTGAGTTATTCTACCACCTTTGTGTGCTTGTGCAGCACTTTGCTATATGAGAAATGCATATATACCTTTTAGAAGTATTTACGTTTTCCACAAAAATGTTAAGCAGCACAACTGTTTTCAACATTAAGAGTTATAAGATTTCTTTTGGAGCACCAAATCAGTATATTAGAATGATTTCTGAAGTATCATGCGACACTGAAGACTGGAGTAAAGCTGAAAATTTAGCTTTGACATCACAGGAATAAAATATATTAAAATAGATTAAAATTAATAAAATAATTTTTTGTTTCACTTCAAATAATGATCAAATAAATGTAGCCTTGGTTAGCAAAAGAGTATTCATTAAAAAAAAAAAAAAAAAAAAAAAATCTTACCAACCCCAAAATGACCATTTCTCTCTTTTTTATTGCATATTGATAGAGGAATATAATTTGTATAAACAGAAATGCTGAAAGAAGTCAATGCTTTATCACAATACTTCTGTACTGATACTATTCAATACTATTCAAAAACTAGTCTCAAGGAGGCAGATGAAGTGAAGTCTTTCATCGGAAAGATTAATGAATTAAGATTCGCCATTGACCTGTTGTCATTTAGCTCTAGGCTACATGATAAGAGACACTCATCGCTTGTCATCACCTGTGTAACCCACGTTACTGCTCACATCACAAAAGCCCGGGGCAATGCTGAGGCTCCACTGGAACGCTATAAAGAATTTCATATCACTGGAATAAGATTGAGGTGTTCCCCTGAAAGGGAGCACGTTTCCTTGTGGTTAATGCGTTTTTCACGGGATGTGGCTACAGCCATCCGAGTAGACAGGATAATCGAACTTTTTCATCGCATTTTGGGGAGCCAAAATCAGTGCCTGAAGGACAATGAGTGCGGAGCCTCTTTGTGTGAATCAATGGTCTCAGATTGTTCTCCAGAGTCCCCAGACTCATGCTCGCTGTCCTGCATGGAGCCCTTTGCGGTCCGCAGGCTTTCCTGTCGGACCATCCAGCTGCCTCCTTTGGCCTTCAGGCAGGCAGAGCAGTACTACTGTGAGAGGAAACCAGAGACCGAGACGGCCCAGCCTCGACCCACCAGCCTCCCGTTGAGAGCACCCCCCCTCATTGCCATCACTTCTGCAGATACAAGCAGGCAACAGAACCCGGTTCCTCTTCAAATCCAAAACTCTCTCGGCTCGCGCAAGAACTTCCGAGTGAGACAGAGAGGGTTTTCCGACACGGAAAAGTACCTGAATCCCAGAAACATGGACCGGACATATGCCGTGGACACCGGTAACCGTCCCGGTTTGAAAAAATCCAGAATGTCATGGCCATCATCCTTTCAAGGACTTAAACGTCTGGAAAGAAATAAGGCTTTTTGCTGGAATCTTCCTGGTTATGACACAGTGCTACAGATGGATTGCAGAACAGATTGACACAGATATGGGTCAGAATATTATATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_04559649_04573405.mRNA True 1584 mRNA 0.42 7 4559620 4573979

Neighbor

gene id symbol gene type direction distance location
CI01000010_04496312_04498116 NA coding downstream 61429 4495851 ~ 4498191 (-)
CI01000010_04445984_04469908 PDE4D coding downstream 89331 4445560 ~ 4470289 (-)
CI01000010_04433165_04436747 NA coding downstream 122691 4432907 ~ 4436929 (-)
CI01000010_04426092_04431357 PLK2B, PLK2 coding downstream 128233 4425424 ~ 4431387 (-)
CI01000010_04383043_04410672 MIER3B coding downstream 147288 4382871 ~ 4412332 (-)
CI01000010_04590937_04594873 ELOVL7 coding upstream 16197 4590176 ~ 4595855 (-)
CI01000010_04597295_04608873 ERCC8 coding upstream 23297 4597276 ~ 4608985 (-)
CI01000010_04612793_04613017 SMIM15 coding upstream 38481 4612460 ~ 4613135 (-)
CI01000010_04631540_04638983 NA coding upstream 57499 4631478 ~ 4639007 (-)
CI01000010_04777992_04782638 CDKN2C coding upstream 203885 4777864 ~ 4782672 (-)
G64280 NA non-coding downstream 37974 4504393 ~ 4521646 (-)
G64382 NA non-coding downstream 276535 4282756 ~ 4283085 (-)
G64237 NA non-coding downstream 323204 4229950 ~ 4236416 (-)
G64332 NA non-coding downstream 338692 4217753 ~ 4220928 (-)
G64411 NA non-coding upstream 3765 4577744 ~ 4578094 (-)
G64418 NA non-coding upstream 40186 4614165 ~ 4615086 (-)
G64421 NA non-coding upstream 68910 4642889 ~ 4644040 (-)
G64249 NA non-coding upstream 106685 4680664 ~ 4681232 (-)
G64231 NA non-coding upstream 116293 4690272 ~ 4692617 (-)
CI01000010_03890095_03899058 SSBP3B, SSBP3, SSBP2 other downstream 659709 3890069 ~ 3899058 (-)
CI01000010_03527436_03530341 NA other downstream 1027968 3527408 ~ 3530359 (-)
G61965 NA other downstream 3014569 1424425 ~ 1545051 (-)
G61888 NA other downstream 3313602 1244469 ~ 1246018 (-)
G64564 NA other upstream 475176 5049155 ~ 5242926 (-)
G64877 NA other upstream 1342278 5916257 ~ 5917011 (-)
G64918 NA other upstream 1519710 6093689 ~ 6096480 (-)
G65453 NA other upstream 3089712 7659435 ~ 7672343 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G73641 NA non-coding CM030128.1 CM030128.1 36490183 ~ 36500130 (+)
tiger barb (Puntius tetrazona) G62120 NA non-coding NC_056706.1 CM032075.1 8507891 ~ 8508123 (-)
mexican tetra (Astyanax mexicanus) G68125 NA non-coding NC_035903.1 CM008306.1 32213885 ~ 32214276 (+)