CI01000010_04777992_04782638 (CDKN2C)


Basic Information

Item Value
gene id CI01000010_04777992_04782638
gene name CDKN2C
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 4777864 ~ 4782672 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_04777992_04782638.mRNA
ATCAGAGATATTCTACCTCCTTTGTCAGTATATAATGGCCGAGGACACAGCTATAGATGGACTGAGCACTGCAGCTGCGCAGGGAAATCTGATGGAAATTGAGCAGATACTGCAAAGCAACGTGAACGTTAATGAGAAGAACAAGTTCGGCAGGACACCATTGCAGGTGATGAAACTTGGCTGCCCGCGCATTGCAGAGACGCTGCTTCGAGCAGGCGCCGACCCAAACGTGCGCGACCCCATCCTAGGACTGACCGTCAGTCACGACGCCGCGCGTGACGGATATCTGGACACTCTACAGGTGCTCGCGCAGAATGGTGCTGATGTCAATCTTCTTGACAACAAGGGCAATCTGCCTCTGCATCTGGCGGCGCAAGAAGGATGCCTGGATGTCGTGCAGTATCTCGTATCTTGCTGCAATACGCAGCCTTTTCTGCGTAATGCAAAAGGCCAGACGCCTCTTGACTTGGCGTCATTGCACAGAAAATATAAAACTGTGGAGTGCAGCAGAAATCCGTTAGATCGGTGGGAGGAAACAGTCCAGTGCGCAGTGCCAAGATTTTCAAATTTAGGCGCTTTCGGTGTAAAAACGCTCCGGATTCTCCCCAAACGCTCTCTGCAAGAGAAGACGAAACTTATATGGTGTTTGGCGCTTCTAAAAGCAGTTTTCATGATTATGGAGATGCCATGCAGTGATCTTCTTCCTGGTTGCTCGGCTGCGTAAAATCTTCTAGAAACGCACGATGTTTGACAACGCGTTATCCTTCAAAACAAATGAATTACATTTATGATAATTATTCAGCTCCTAACATGGGTTTATATCGACTGTCAGCGATGAAAAAGGTAAATAAA

Function

symbol description
cdkn2c Is expressed in digestive system. Orthologous to human CDKN2C (cyclin dependent kinase inhibitor 2C).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K06622 CDKN2C, P18, INK4C; cyclin-dependent kinase inhibitor 2C

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_04777992_04782638.mRNA True 852 mRNA 0.48 3 4777864 4782672

Neighbor

gene id symbol gene type direction distance location
CI01000010_04631540_04638983 NA coding downstream 138857 4631478 ~ 4639007 (-)
CI01000010_04612793_04613017 SMIM15 coding downstream 164729 4612460 ~ 4613135 (-)
CI01000010_04597295_04608873 ERCC8 coding downstream 168879 4597276 ~ 4608985 (-)
CI01000010_04590937_04594873 ELOVL7 coding downstream 182009 4590176 ~ 4595855 (-)
CI01000010_04559649_04573405 NA coding downstream 203885 4559620 ~ 4573979 (-)
CI01000010_04958548_04988116 ELAVL4, ELAVL4.L coding upstream 175087 4957759 ~ 4988920 (-)
CI01000010_04997746_05004248 NA coding upstream 214714 4997386 ~ 5004248 (-)
CI01000010_05151648_05156807 NA coding upstream 368714 5151386 ~ 5157078 (-)
CI01000010_05320989_05321993 NA coding upstream 538253 5320925 ~ 5323026 (-)
CI01000010_05426981_05432228 NA coding upstream 644309 5426981 ~ 5432228 (-)
G64253 NA non-coding downstream 4166 4772213 ~ 4773698 (-)
G64436 NA non-coding downstream 30578 4745243 ~ 4747286 (-)
G64428 NA non-coding downstream 33102 4724817 ~ 4744762 (-)
G64231 NA non-coding downstream 85247 4690272 ~ 4692617 (-)
G64249 NA non-coding downstream 96632 4680664 ~ 4681232 (-)
G64685 NA non-coding upstream 598069 5380741 ~ 5381384 (-)
G64694 NA non-coding upstream 627748 5410420 ~ 5410653 (-)
G64704 NA non-coding upstream 681012 5463684 ~ 5464065 (-)
G64707 NA non-coding upstream 684833 5467505 ~ 5467730 (-)
G64708 NA non-coding upstream 685635 5468307 ~ 5468634 (-)
G64237 NA other downstream 541448 4229950 ~ 4236416 (-)
CI01000010_03890095_03899058 SSBP3B, SSBP3, SSBP2 other downstream 877953 3890069 ~ 3899058 (-)
CI01000010_03527436_03530341 NA other downstream 1246212 3527408 ~ 3530359 (-)
G61965 NA other downstream 3232813 1424425 ~ 1545051 (-)
G64564 NA other upstream 266483 5049155 ~ 5242926 (-)
G64877 NA other upstream 1133585 5916257 ~ 5917011 (-)
G64918 NA other upstream 1311017 6093689 ~ 6096480 (-)
G65453 NA other upstream 2881019 7659435 ~ 7672343 (-)
CI01000010_07880416_07900104 NA other upstream 3059964 7880375 ~ 7900104 (-)

Expression


Co-expression Network