CI01000010_04958548_04988116 (ELAVL4, ELAVL4.L)


Basic Information

Item Value
gene id CI01000010_04958548_04988116
gene name ELAVL4, ELAVL4.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 4957759 ~ 4988920 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_04958548_04988116.mRNA
AGTGAGTTGTGTTTATATAGTGGGAGCTTGTTTTATGACACGGCTATGTGCATGCGTGCATGTCTGTAATATTACATTTTCTTTGAGGTTGTGCCTCTGCAGTTTGTTAGAGAGCACAGATGAGATATGGGATATTTAATAGAGATCAGTTTAAGGTTCTGTTAATGTGTCTGTTCGCGGGGAAATTAAATTAGCTAAATAATTGCCTTGCCAAAAAAAAAGGCCCTTAGAGATTGTCAAAACAACTCGCAGCCTCCTTTCTTTAAAGCAGGATGATTTTATTCTTTGTATTGTCATATACTACAAAGACTAATAATGAAATTATGCACTTAAATTAATAATTAATGAACTCACTAAGGGGTTCTTCTTTTAATTTTCTTAAAATATTAAGAATATGACTCAGTTCCACAACAATCCTCGTAACCCAAGTGTACGTAGGTGTGTGCGCTAGTGTTTTTTTCTTAGCAAACAGCCTGGTTCTGGTCCCCCACTGAGATCTCCACTGTCGCACCGCTATGTGATGGAGAAGGGATGTGTGTTGTGTGTGTATGTGTATGTGTGTGTGTGTGTGTGTGTTATACTGGTGAGAGAAATCCCTTTGACTAAGGCAGTGGCCTTGGTCGGCCTCACCTTATCCTCAGGCAAGAACTCCAAAGGAGGCAAGAACAACTGCTAGCGACGTTATGGAAATGCCATCAGGCAAAGGGGCATTACAAAACAGATTGTTTTATGAACCCATTATTGTACGCTCAAACACACAATCATGCAAACACATGCATCCACCCACACGCACATATACACACAATGCAAATGGCATTACGGGGCATGCCAACGTGGGGCCAAATGCTCTGGGCCACAAAGGAAAGAGCGAGGAACACAGCTGAGATGGTGGCGACAGAGAAAGACAAATGTAGAGGGCAGAGTCTTGGCTATGGTTTCGTCAACTACATTGACCCAAAAGATGCAGAGAAAGCCATTAACACGTTAAATGGACTCAGACTTCAGACCAAAACTATTAAGCATGGGTCAGAGAAGCCAATGTCTTTATCTCTTCCATGTGATCTCTCTTTTACACCTCTCACGCTATCGGCCCTCCCCGCTCGTTCTCTTTTCTCTCTGCACTCCATGAAACCTCTTATTCAGACCAGCACCAGCCCTCTCAAAAGATGCTCTCCTGCTGTAATACGGCAAGAGAGAGAGAGTGTGACAGACTCTGTCCAAGGTGCTGCCGAGTTTGACAAGTCGAGAGAGTGGAGGATTTTGGGGCATTATCTTTCTGAAGTCTCAGGCTGCTCCAGGTCAATGCAAGAATACAGACCACCAACACAGTGTGAGACAGAACAGGTGTCATATGCACGGCCCAGCTCGGCTTCTATCCGTGACGCTAATCTGTACGTGAGTGGGCTGCCCAAGACCATGACCCAGAAGGAGCTGGAACAGCTCTTCTCTCAGTACGGACGGATAATCACCTCCCGCATTCTCGTCGACCAGGTCACAGGTGGCTCGCGGGGTGTGGGCTTTATTCGCTTTGATAAGAGGATAGAAGCGGAGGAAGCCATCAAGGGTCTGAATGGACAGAAGCCCTCAGGTGCCGCCGAGCCCATTACGGTGAAGTTTGCCAACAACCCCAGCCAGAAGACCAGCCAGGCATTACTGTCGCAGCTGTACCAATCCCCCAACCGGCGCTACCCGGGACCCCTCCACCACCAAGCGCAGAGGTTCAGGCTGGACAATTTGCTTAATATGGCCTATGGCGTTAAGAGGTTCTCCCCCATCACCATCGATAGCATGACCAGTCTAGTAGGGATGAATATCCCCGGTCACACAGGAACGGGCTGGTGCATCTTCGTCTACAACCTGTCCCCGGACTCGGACGAGAGCGTCCTGTGGCAGCTCTTCGGACCGTTCGGCGCCGTCAACAACGTCAAGGTGATCCGCGACTTCAACACCAACAAGTGCAAGGGGTTCGGTTTCGTCACCATGACAAACTACGACGAAGCGGCCATGGCCATCGCCAGTCTGAATGGGTATCGGTTGGGTGACCGTGTCTTGCAAGTGTCTTTCAAGACCAACAAGACCCACAAGTCCTGAACTCCCCTCCCATCACTTGTGTAGCTCCTTACAGCTCCTCTAATACTAAAAACCCACCTCTGCCCACTCAGCTACTCAAAACAGGAACACACCCAACCAACAAACCCACAAAAAAAGAACTGGATATGGCTTATAATATAACTTTGGACCTATAAGCCAATGTTGCCTAAGTATTACAAAATGACAAATTGAGAATATTCATTATTTGGAGACCCTGGAAGTGGTACAGGGATTCTGTTGTATATCTTTTTGAGTTCTCGTGGTTGTCTTTACTTTTTTCTTTTTTTTTTCTCTGTAAACAGTAGCAAAACCAGACCGCCCTTATTTTGAAGAAGAAAATGTCCTTCTTTAGATCGAACTCTCTTGGTGTCGATTCAGGATTTTTTCTTTCTTTTTTAAATCCGGATCCACTGTCGTTAGAATAACACCTCCCTGGTAAGAGAACGGGAGGGGGCTCTTTTTAAAAAAAGAAGAAGAAAAAAAATCGGTGATCATTCATTCATTTGTTTTGGTGTAAAATGTTAGAGAACCCCAATGAATTGACAGGGATGAGGCCATCCCTTTTCTCTAATGCAGAAGATGTTTCTAGCATAGTTTTGGTTTTGTACTGCAAACAAAACACACGTCTGTCCTCACGGGGGATTCAGGGGGAAGGGGCGAGGGAAGGGATGGGCTAGCGCTCCTGATGACACGTTGCGTCAAAAAAAAAAAAAAAACCTACACACACACTGTTGCCAAAGAGAAAATCTCTTTGCTTGAAAATGCGTTTAGAAAAAATGAAAAAATAAA

Function

symbol description
elavl4 Predicted to enable RNA binding activity. Acts upstream of or within axonogenesis. Part of protein-containing complex. Is expressed in nervous system and trigeminal placode. Orthologous to human ELAVL4 (ELAV like RNA binding protein 4).

GO:

id name namespace
GO:0006397 mRNA processing biological_process

KEGG:

id description
K13208 ELAVL2_3_4; ELAV like protein 2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_04958548_04988116.mRNA True 2880 mRNA 0.46 9 4957759 4988920

Neighbor

gene id symbol gene type direction distance location
CI01000010_04777992_04782638 CDKN2C coding downstream 175087 4777864 ~ 4782672 (-)
CI01000010_04631540_04638983 NA coding downstream 318752 4631478 ~ 4639007 (-)
CI01000010_04612793_04613017 SMIM15 coding downstream 344624 4612460 ~ 4613135 (-)
CI01000010_04597295_04608873 ERCC8 coding downstream 348774 4597276 ~ 4608985 (-)
CI01000010_04590937_04594873 ELOVL7 coding downstream 361904 4590176 ~ 4595855 (-)
CI01000010_04997746_05004248 NA coding upstream 8466 4997386 ~ 5004248 (-)
CI01000010_05151648_05156807 NA coding upstream 162466 5151386 ~ 5157078 (-)
CI01000010_05320989_05321993 NA coding upstream 332005 5320925 ~ 5323026 (-)
CI01000010_05426981_05432228 NA coding upstream 438061 5426981 ~ 5432228 (-)
CI01000010_05433471_05438881 NA coding upstream 444482 5433402 ~ 5438881 (-)
G64253 NA non-coding downstream 184061 4772213 ~ 4773698 (-)
G64436 NA non-coding downstream 210473 4745243 ~ 4747286 (-)
G64428 NA non-coding downstream 212997 4724817 ~ 4744762 (-)
G64231 NA non-coding downstream 265142 4690272 ~ 4692617 (-)
G64249 NA non-coding downstream 276527 4680664 ~ 4681232 (-)
G64685 NA non-coding upstream 391821 5380741 ~ 5381384 (-)
G64694 NA non-coding upstream 421500 5410420 ~ 5410653 (-)
G64704 NA non-coding upstream 474764 5463684 ~ 5464065 (-)
G64707 NA non-coding upstream 478585 5467505 ~ 5467730 (-)
G64708 NA non-coding upstream 479387 5468307 ~ 5468634 (-)
G64237 NA other downstream 721343 4229950 ~ 4236416 (-)
CI01000010_03890095_03899058 SSBP3B, SSBP3, SSBP2 other downstream 1057848 3890069 ~ 3899058 (-)
CI01000010_03527436_03530341 NA other downstream 1426107 3527408 ~ 3530359 (-)
G61965 NA other downstream 3412708 1424425 ~ 1545051 (-)
G64564 NA other upstream 60235 5049155 ~ 5242926 (-)
G64877 NA other upstream 927337 5916257 ~ 5917011 (-)
G64918 NA other upstream 1104769 6093689 ~ 6096480 (-)
G65453 NA other upstream 2674771 7659435 ~ 7672343 (-)
CI01000010_07880416_07900104 NA other upstream 2853716 7880375 ~ 7900104 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G143075 elavl4,LOC106613894,LOC103028496 unknown CM030140.1 CM030140.1 2440541 ~ 2559080 (+)