RNA id: TU71288


Basic Information

Item Value
RNA id TU71288
length 137
RNA type TUCP
GC content 0.45
exon number 1
gene id G62599
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 3531516 ~ 3531652 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATTAGGGCGACCTGCTCTCTAATGTATAGGTGCGCGTGGAGACCAGCTCTCTAGAATATATAGGGCGGCTAATGAATTGTTGTCACTCATTATTTTTGCACTCAACGCGAGGCAACACCATACAGAAGTTTTTCAGTGAGAAATCGAAGAGAGCATGAGTGTTTCTGCAGTCAAAAACACTCCGGATGAGTATGAGGATGACTTTGAGAAAGACCTGGACTGGCTTATCAGCGAGGAGAGCAGGAGTGAGGAACAGGATCCAGATGATGATGACATTGAAGCTCAGATCGACAAAGAGCTTGAAGAAGATGAACCTAAAGAAGAAAGAAAGAAGGATGCGCACAAACACAGGGAAAAGGATGATGAAGAAGCAGAAGAAAGGTGGCCAACGCCTATGGAGCCATTAGAAGATGCGTTAGATCCCGACAGGGACGACCTTATAACCTCTCCACATTTACAGAGCGACGAAGACCTCGATGAAGAGAAGAAATACATTTTGGATAAGATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71342 lncRNA downstream 91090 3438346 ~ 3438580 (-) True G62650
TU71340 lncRNA downstream 92742 3436698 ~ 3436928 (-) True G62648
TU71284 lncRNA downstream 93562 3391336 ~ 3436108 (-) True G62596
TU71328 lncRNA downstream 126852 3402307 ~ 3402818 (-) True G62636
TU71306 lncRNA downstream 141432 3367235 ~ 3388238 (-) False G62616
TU71377 lncRNA upstream 67174 3598826 ~ 3599035 (-) True G62682
TU71395 lncRNA upstream 99886 3631538 ~ 3632004 (-) True G62699
TU73016 lncRNA upstream 388018 3919670 ~ 3919890 (-) True G64119
TU73023 lncRNA upstream 397964 3929616 ~ 3931626 (-) True G64126
TU72977 lncRNA upstream 425707 3957359 ~ 3958683 (-) False G64084
CI01000010_03517080_03524389.mRNA mRNA downstream 5281 3516860 ~ 3524389 (-) True CI01000010_03517080_03524389
CI01000010_03494576_03500309.mRNA mRNA downstream 29361 3494306 ~ 3500309 (-) True CI01000010_03494576_03500309
CI01000010_03308058_03308511.mRNA mRNA downstream 219323 3307482 ~ 3310347 (-) True CI01000010_03308058_03308511
CI01000010_03204475_03207149.mRNA mRNA downstream 322521 3204435 ~ 3207149 (-) True CI01000010_03204475_03207149
CI01000010_03109809_03114298.mRNA mRNA downstream 415372 3109803 ~ 3114298 (-) True CI01000010_03109809_03114298
CI01000010_03544215_03547481.mRNA mRNA upstream 11868 3543520 ~ 3547481 (-) True CI01000010_03544215_03547481
CI01000010_03557384_03566580.mRNA mRNA upstream 25280 3556932 ~ 3567714 (-) True CI01000010_03557384_03566580
CI01000010_03617450_03619486.mRNA mRNA upstream 85691 3617343 ~ 3619486 (-) True CI01000010_03617450_03619486
CI01000010_03787388_03880750.mRNA mRNA upstream 255736 3787388 ~ 3880750 (-) True CI01000010_03787388_03880750
CI01000010_03890095_03899058.mRNA mRNA upstream 358443 3890095 ~ 3899058 (-) False CI01000010_03890095_03899058
TU70569 other downstream 1984619 1424425 ~ 1545051 (-) True G61965
TU70485 other downstream 2283652 1244469 ~ 1246018 (-) False G61888
TU70488 other downstream 2283652 1244469 ~ 1246018 (-) False G61888
TU69515 other downstream 2954159 572753 ~ 575511 (-) True G61045
TU72970 other upstream 358417 3899741 ~ 3899911 (-) False G64080
TU72971 other upstream 358417 3899741 ~ 3899911 (-) True G64080
TU73142 other upstream 698298 4229950 ~ 4236416 (-) False G64237
TU73132 other upstream 1080844 4613485 ~ 4613556 (-) True G64230
TU73495 other upstream 1517503 5049155 ~ 5242926 (-) True G64564

Expression Profile