RNA id: TU72977



Basic Information


Item Value
RNA id TU72977
length 1325
lncRNA type sense_over
GC content 0.35
exon number 1
gene id G64084
representative False

Chromosome Information


Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 3957359 ~ 3958683 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGACTGTGATATTTGGATCCTATATGATTGCACACGGATTCTTTAACGTCTATGCCATGTGTGTAGACACATTGTTCCTCTGCTTCTTGCTTGATCTGGAGAAGAACAACGGCTCGGCAACCCGGCCGTATTACATGAGCAGCAGCCTGCGAGCCATCCTCAACAAGAAGAACCACAAGAGGCCAAAGGAGAAAAAGAAAGGCAGAAAATAAAAGGAGCAAGCAACAAAAAGGCACTGATCTGAAAAACAGACACTGCCGGTTGTTGTTCTGTTTGCTGACCATCAGCGTCCTAAATGGACTGCTTTAAGCAGTATTCAGTCATGTCCGTAGGCAGCCTTTGTGTTATAAATCTTATTAGAAGCCCAAAAATACAAATACAAGAGTCTTCGATCTGATCAGCATCTTTTTGTTATGTTTTCATTATGAAGGTAAATATAATTGACAATTATAATTGGCAACTAAATCAGCTGCGATTATTTCCTGTTTATAGGTGTGTGGAAGTGTCTTGCTTTCTATGCATTTTTATAGATTTAGTAATTTTTTAACCGATTCTTGTCTTTTATATGACCATTGCATTCTGTTAGCACCCATTTGGGGTGAAACTGCCACTTTTCTCATATTGAGAAAATGACCGGTAACACATTTTAATTGCTCTTCACTAGATGAATTTTCCTCAACTTTTATAAGTTGCTGATTGTAATTGCAGTTCAGCTGAAGTGCCTTACTCCAACACTCCGTTAACAGCTCTTTTAACCTCAACCACATGTTGATTTGAGCCCTTTTCTGCTGTGCAGAGCTTTAAACTCTTATTTATTCCTTCATTACTGCTCTTATTCATCCATCCAAACTGCATTTCTCATCAGATCGATTGCTCTCTAGCAGTAGGTTACAACCCTTGCTCCTTCAGAGTGATTTCATTTTGTCCGTTCACACTTCATTATAGCCAAGGAAGGACTTCAATTTATGTTAATAACACCTTGATATGAATATGTGTGCAGAATGTTAGTAGTTATTTTAGGTTGACTAATTTCTCCTCATATTTTGATGTTTTTTACAATGTTACAATGTACACATTTTTCCTCCTTATTTAAAAGGGATATTTCTTCAAATGTTTTAATCAAAATCCATTTTTTTACCAGTTTTATGTTAAGAACACTTGAATGTGAACGCTAATACAGTGAGTGCATGTGCTGAAATGTTATTCGGCTCTCATAATTCATTTAAATTGTATTTTTTTTTTTTTTTTTTTTAACACTTGTCTTATCTTATTAGTATGTAACTTTATTTAATTCTCTTCTTTTACAGTGTGGTAAATGTTTTTATTATTTTTGTGACCATATATTGTGCTAATTTGTAATGCATAATAACACTATGGTGTAATCCACGTGCATGCAAGGTTAAATTTGGAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU73023 lncRNA downstream 25733 3929616 ~ 3931626 (-) True G64126
TU73016 lncRNA downstream 37469 3919670 ~ 3919890 (-) True G64119
TU71395 lncRNA downstream 325355 3631538 ~ 3632004 (-) True G62699
TU71377 lncRNA downstream 358324 3598826 ~ 3599035 (-) True G62682
TU71342 lncRNA downstream 518779 3438346 ~ 3438580 (-) True G62650
TU73070 lncRNA upstream 92972 4054537 ~ 4055332 (-) True G64168
TU73071 lncRNA upstream 95652 4057217 ~ 4059152 (-) True G64169
TU73245 lncRNA upstream 256188 4217753 ~ 4220928 (-) True G64332
TU73144 lncRNA upstream 269628 4231193 ~ 4236416 (-) True G64237
TU73295 lncRNA upstream 321191 4282756 ~ 4283085 (-) True G64382
CI01000010_03941555_03947042.mRNA mRNA downstream 10317 3941555 ~ 3947042 (-) True CI01000010_03941555_03947042
CI01000010_03914320_03915250.mRNA mRNA downstream 42109 3914252 ~ 3915250 (-) True CI01000010_03914320_03915250
CI01000010_03912179_03913373.mRNA mRNA downstream 43986 3911683 ~ 3913373 (-) True CI01000010_03912179_03913373
CI01000010_03890095_03899058.mRNA mRNA downstream 58301 3890095 ~ 3899058 (-) False CI01000010_03890095_03899058
CI01000010_03787388_03880750.mRNA mRNA downstream 76609 3787388 ~ 3880750 (-) True CI01000010_03787388_03880750
CI01000010_03992093_03992619.mRNA mRNA upstream 29536 3991101 ~ 3993606 (-) True CI01000010_03992093_03992619
CI01000010_04028461_04031710.mRNA mRNA upstream 66732 4028297 ~ 4031710 (-) True CI01000010_04028461_04031710
CI01000010_04153653_04157398.mRNA mRNA upstream 190315 4151880 ~ 4158138 (-) True CI01000010_04153653_04157398
CI01000010_04311215_04316218.mRNA mRNA upstream 349169 4310734 ~ 4316671 (-) True CI01000010_04311215_04316218
CI01000010_04356379_04367982.mRNA mRNA upstream 394772 4356337 ~ 4368250 (-) True CI01000010_04356379_04367982
TU72970 other downstream 57448 3899741 ~ 3899911 (-) False G64080
TU72971 other downstream 57448 3899741 ~ 3899911 (-) True G64080
TU71288 other downstream 425707 3531516 ~ 3531652 (-) True G62599
TU70569 other downstream 2412308 1424425 ~ 1545051 (-) True G61965
TU70488 other downstream 2711341 1244469 ~ 1246018 (-) False G61888
TU73142 other upstream 268385 4229950 ~ 4236416 (-) False G64237
TU73132 other upstream 650931 4613485 ~ 4613556 (-) True G64230
TU73495 other upstream 1087590 5049155 ~ 5242926 (-) True G64564
TU73846 other upstream 1954692 5916257 ~ 5917011 (-) True G64877
TU73887 other upstream 2132124 6093689 ~ 6096480 (-) False G64918

Expression Profile