RNA id: CI01000010_03992093_03992619.mRNA


Basic Information

Item Value
RNA id CI01000010_03992093_03992619.mRNA
length 2282
RNA type mRNA
GC content 0.36
exon number 3
gene id CI01000010_03992093_03992619
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 3991101 ~ 3993606 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATTTCACTGCATATGCAACAAATCAAAATGTGAAGGTTGCCTAAACCAGGGGTTTTCTATCCTGAGTGCTGCATTGCATATTTTGTATGTTTTCCTTATTAAACGCTTGATTCAGATCAGGCATTAAAGGCATAGTTCACCCAAAAATGAAAATTCTGTCATCATTTACTCACCCCCAGGTTGCTATAAATTTCTTTACAGGTTGTATAAATTTCTTTGTTCTGTTGAACACAAAGGACGATATTTTAAAGAATGTGGGAAACTGAACAGTTCTGGGGCACCATTGACTTCCATGGTAAAAAAAAGTTTCCCACATTCTTCAAAATATCTTATAATAAGCCTGTTTACAAACTTTCTTCAAAATACATTCCTTTGTGTTCAACAGAACAAAGAAATTTATACAGGTTCGGAACAACTTCAGGGTGAGTAAATTATGACAGAATTTTCATTTTTGGGTGAACTATCACTTTAAGGCATGTTCATCAATTTACATTGGCATTAATAACAACACATTACTGCCATCAGGTGGTGAAATGCAAACGTTGGCACTTGGCATCCTCAGTAATTTAATAACATGCATTTCCACAGCTTGTGGTTAATATTCATTTTTTCAGTTTTATTTCATTTATTTCATTTTTGAAAGATCTGATATGTTAAAATTATGTATTACTTAATCCAATCAAATCAAAGTTAGTCGTTTGTTTACATATATTTTGGATCTTAAATAGGGTAAATGTAGTAGTCTTTTAAGATGAAACAATGCAACCAAACCAAAAACATTTGAGACGTCTAACCTTTGTTACTACATGATTTATATCTAGTTACATGGCCGCCAATCATTGTGGTTGCCACAAGGCCATACTGTACATAAATGCTTACAGAACAATTTCTTATTGTGTCGAGCAGCACAGGAGAATTTCAAAACACTGGCACATTGTTTTCTGCTGATTTACTTCGTTCTCAAGTGTTTTTCTGTGCCTTCCCAATGTCTCCTATTTTCCCACCAGTATTACGATATGTCCCACCTCCTGAGTGTCCCACTGCTGATGGCGCTGTAAACACAGTGACGCGGCCGTTGCGTGGCCCATGCAAATCACAGATTGGTGTTGTATATGTGGACGAGTGCGAGAGACGCTATATTCACGTCCACAGCTTCATATGCAATCACATAAACAAAAGACACGCGAGGACTGCTCGTCGGAGGTGCAATGGCAAGGAAAAGTGCAATTCCTCCTTCATACTATGTTCATATTTTAAGAACCTCTATCCAGAACAAAAGGTCCACTGATATGTTTTCATCCTGATAGTTACTTTGTTGTTGCAAAACGGGAAGATGTGCAGACAAAACATAGGTTCGAATTCTGAATTCGGAAAGGATTTAATTGTTACGTTATAGAAGTGAACTGGAAAGCAAGAATTGGGATAATGGAAAACATATATGATGTTTACTGAGATTTTTGTGTGTGTTTTTGTGCTGTGCAAGTCCTCATATTACGTGTGGTACTCTTATAGCTTAGTATACAACCAGTCAATGTGGAGTAAAACAACGTGATATATGGGTCAAAACACAAACAAGCCGAGACCTTGTATATATTGCAAATCATGGGAGTTGAACACATAAATAAATTAATGGCACTCTTAAGAAATATGATCAAATTATCCTACGCTCACATGAAATGAAGATAATAACGGTGACTATTTTAGCATCCACACCAACAGACGATAACGTTCTGTTTATTATAAAGTCTGTTGGATTCTGATTAGCCGTCAATGTTTTTATCTTAAAAAATCATTCTGAAAGTGATTCCAATGATATTGTTCCGTGTCGTTATTGTTATAGCTGTGTTGGAACTTCCCTATTCTCATAGAATTAGAACGATTATTAAAACTTTATAGTCATAGTTATCGTCCTTGGTGTGAACAGCCCTTTATACATCTGTTTTATTCTACATGGAGTGGGTCGCCCCCTAATGATCGCCGCCATGTTGCCATCACATGACCAGTTGTTCTGCTGCTTTAAAAACTTTAGCTCTTTAAAGTCGGCTGGATTCTGATTGTCTGTCACAATTTTTTTACCGTTCATGAGCTAAAAAAAAAACGTCCTGAAAGTGATTCTAATGATATTGTTCCTCTTTGTCATTAACGTTTTATGATGTGATTAAATTGCTGGAGTTGCTGTTTGTAGTCTGCACATCATTTTTTTAGTCTGAATCCAAGAGTGTGTTATACACACATATATGAATGTGTTTATTATGAGACAGAGAAAAACAGATTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72979 lncRNA downstream 29471 3957359 ~ 3958683 (-) True G64084
TU72977 lncRNA downstream 29536 3957359 ~ 3958683 (-) False G64084
TU73023 lncRNA downstream 59475 3929616 ~ 3931626 (-) True G64126
TU73016 lncRNA downstream 71211 3919670 ~ 3919890 (-) True G64119
TU71395 lncRNA downstream 359097 3631538 ~ 3632004 (-) True G62699
TU73070 lncRNA upstream 60931 4054537 ~ 4055332 (-) True G64168
TU73071 lncRNA upstream 63611 4057217 ~ 4059152 (-) True G64169
TU73245 lncRNA upstream 224147 4217753 ~ 4220928 (-) True G64332
TU73144 lncRNA upstream 237587 4231193 ~ 4236416 (-) True G64237
TU73295 lncRNA upstream 289150 4282756 ~ 4283085 (-) True G64382
CI01000010_03961520_03974921.mRNA mRNA downstream 16180 3961419 ~ 3974921 (-) False CI01000010_03961520_03974921
CI01000010_03941555_03947042.mRNA mRNA downstream 44059 3941555 ~ 3947042 (-) True CI01000010_03941555_03947042
CI01000010_03914320_03915250.mRNA mRNA downstream 75851 3914252 ~ 3915250 (-) True CI01000010_03914320_03915250
CI01000010_03912179_03913373.mRNA mRNA downstream 77728 3911683 ~ 3913373 (-) True CI01000010_03912179_03913373
CI01000010_03890095_03899058.mRNA mRNA downstream 92043 3890095 ~ 3899058 (-) False CI01000010_03890095_03899058
CI01000010_04028461_04031710.mRNA mRNA upstream 34691 4028297 ~ 4031710 (-) True CI01000010_04028461_04031710
CI01000010_04153653_04157398.mRNA mRNA upstream 158274 4151880 ~ 4158138 (-) True CI01000010_04153653_04157398
CI01000010_04311215_04316218.mRNA mRNA upstream 317128 4310734 ~ 4316671 (-) True CI01000010_04311215_04316218
CI01000010_04356379_04367982.mRNA mRNA upstream 362731 4356337 ~ 4368250 (-) True CI01000010_04356379_04367982
CI01000010_04374856_04376532.mRNA mRNA upstream 380902 4374508 ~ 4376946 (-) True CI01000010_04374856_04376532
TU72970 other downstream 91190 3899741 ~ 3899911 (-) False G64080
TU72971 other downstream 91190 3899741 ~ 3899911 (-) True G64080
TU71288 other downstream 459449 3531516 ~ 3531652 (-) True G62599
TU70569 other downstream 2446050 1424425 ~ 1545051 (-) True G61965
TU70488 other downstream 2745083 1244469 ~ 1246018 (-) False G61888
TU73142 other upstream 236344 4229950 ~ 4236416 (-) False G64237
TU73132 other upstream 618890 4613485 ~ 4613556 (-) True G64230
TU73495 other upstream 1055549 5049155 ~ 5242926 (-) True G64564
TU73846 other upstream 1922651 5916257 ~ 5917011 (-) True G64877
TU73887 other upstream 2100083 6093689 ~ 6096480 (-) False G64918

Expression Profile