CI01000010_03961520_03974921 (SLC44A5B, SLC44A5, SLC44A5A)


Basic Information

Item Value
gene id CI01000010_03961520_03974921
gene name SLC44A5B, SLC44A5, SLC44A5A
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 3961419 ~ 3974921 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_03961520_03974921.mRNA
TGCTCTCATTCTCTCCCTTACATTCTGTCTTTCTCACATTCCCACTGCAGGGGCTGCACAGACGTGCTTTGCTGTGTGATCTTTGTCATCGTCATCCTCGGATACATCGTTCTGGGAACAGTGGCTTGGATGCATGGGGATCCCCGGAAAGTGGTCTACCCGACAGACAGCTATGGGCAGTTCTGTGGACAGCGGGATACTCCTAATGCAAATAAAGCCATATTATTTTACTTCAATATTTTACAATGTGCCAATCCTACAGTCCTCATTAACCTCCAGTGCCCTACAACTCAGCTGTGTGTATCCAAGTGCCCAGATAGATTTGCCACATACATTGACATGCAATACAACTATAGACGCAATAAGACCTACTGGGAATACTACAAGCAATTCTGCAAGCCGGGATTCAACAATCCTGATAAGGCGGTTTCTCAGGTGCTACGGGATGAAGATTGTCCCTCAATGATTGTGCCAAGCAGACCATTTCTCCAGAGGTGCTTTCCCGATTTCATCACCAGAAACGGGATGTTAACTGTTGCAAACCAAACAAGCTTCAAAGATGGACATGGTAAAACCAGAAGTGTCGTCGATCTGAGAGATGCGGCAAATGGCATCACCAGCCTGTTGGATGCAAAGGAAATCGGCATCAAGATCTTTGAGGATTTCGCCAGCTCTTGGTTTTGGATTCTAGTTGGTCTGGTGATTAGCATGCTGGTCAGTCTGATCTTTATTCTGCTGCTGAGGTTCACCGCTGGCGTTCTCTTCTATATGGTCATCTTCGGGGTCATCGCGGCTGTGGGCTATGGAATATGGCATTGTTACTGGGAGTACAGTTCTCTCAAGGGGAAGCCGGACTCTGATATCACCATCTCAGACATTGGGTTCCAGACTGACTTTCGGGTGTACCTGCAGCTGAGTCAGACCTGGCTCATATTCATCTCCTTAACCATAACTTTCAGGTTCCTGGCATCATCTGGCGATGCAGTCTATAAAGTAATGTCAACACTACCTGACTGCAAGTATACCAATCTCACCTGTGACCCAGAGACCTTCAGTAAATCAAACGTGACTAAACTGTGTCCGGGCTCCCAGTGCACGTTTGCTTTTTACGGTGGGGAGAGTTTGTACCACCGTTATATCTTTGTACTTCAGCTCTGCAATTTACTTGTCTTCCTCTGGCTGGTGAATTTCACCATCGCTCTGGGCCAGTGCACCCTCGCTGGGGCTTTTGCCTCATATTACTGGGCCTTGAGGAAGCCAGAAGACATCCCACCTTGCCCCTTGGCTTCATCATTTGGCAGGGCTTTAAGGTATCACACGGGCTCTCTTGCATTTGGAGCTTTGATTCTTTCCATCGTACAGTTCATCCGGATTATTCTGGAGTATCTCGACCACAAACTGAAAGACTGTGATATTTGGATCCTATATGATTGCACACGGATTCTTTAACGTCTATGCCATGTGTGTAGACACATTGTTCCTCTGCTTCTGTAAGTACACCTTATTAAATCTGCAATATTCACATACTGGTATGTGTGTTTGGTAATAAA

Function

symbol description
slc44a5a Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human SLC44A5 (solute carrier family 44 member 5).
slc44a5b Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human SLC44A5 (solute carrier family 44 member 5).
slc44a5 Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in plasma membrane. Predicted to be active in membrane.

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15377 SLC44A2_4_5; solute carrier family 44 (choline transporter-like protein), member 2/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_03961520_03974921.mRNA False 1550 mRNA 0.46 13 3961419 3974921

Neighbor

gene id symbol gene type direction distance location
CI01000010_03941555_03947042 NA coding downstream 14377 3941555 ~ 3947042 (-)
CI01000010_03914320_03915250 LRRIQ3 coding downstream 46169 3914252 ~ 3915250 (-)
CI01000010_03912179_03913373 NA coding downstream 48046 3911683 ~ 3913373 (-)
CI01000010_03890095_03899058 SSBP3B, SSBP3, SSBP2 coding downstream 62361 3890069 ~ 3899058 (-)
CI01000010_03787388_03880750 NA coding downstream 80669 3787388 ~ 3880750 (-)
CI01000010_03992093_03992619 NA coding upstream 16180 3991101 ~ 3993606 (-)
CI01000010_04028461_04031710 NA coding upstream 53376 4028297 ~ 4031710 (-)
CI01000010_04153653_04157398 NA coding upstream 176959 4151880 ~ 4158138 (-)
CI01000010_04311215_04316218 NA coding upstream 335813 4310734 ~ 4316671 (-)
CI01000010_04356379_04367982 NA coding upstream 381416 4356337 ~ 4368250 (-)
G64126 NA non-coding downstream 29793 3929616 ~ 3931626 (-)
G64119 NA non-coding downstream 41529 3919670 ~ 3919890 (-)
G62699 NA non-coding downstream 329415 3631538 ~ 3632004 (-)
G62682 NA non-coding downstream 362384 3598826 ~ 3599035 (-)
G62650 NA non-coding downstream 522839 3438346 ~ 3438580 (-)
G64168 NA non-coding upstream 79616 4054537 ~ 4055332 (-)
G64169 NA non-coding upstream 82296 4057217 ~ 4059152 (-)
G64332 NA non-coding upstream 242832 4217753 ~ 4220928 (-)
G64237 NA non-coding upstream 256272 4229950 ~ 4236416 (-)
G64382 NA non-coding upstream 307835 4282756 ~ 4283085 (-)
CI01000010_03527436_03530341 NA other downstream 429767 3527408 ~ 3530359 (-)
G61965 NA other downstream 2416368 1424425 ~ 1545051 (-)
G61888 NA other downstream 2715401 1244469 ~ 1246018 (-)
G61045 NA other downstream 3385908 572753 ~ 575511 (-)
CI01000010_04612793_04613017 SMIM15 other upstream 637575 4612460 ~ 4613135 (-)
G64564 NA other upstream 1074234 5049155 ~ 5242926 (-)
G64877 NA other upstream 1941336 5916257 ~ 5917011 (-)
G64918 NA other upstream 2118768 6093689 ~ 6096480 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location