RNA id: TU73295


Basic Information

Item Value
RNA id TU73295
length 330
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G64382
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 4282756 ~ 4283085 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGCATGGGATAGTGCATAGTGCATTGTATTTCAGAAGGAATTATCCTTCTTTTTATACCAAAGCTGAAAATGGCCAGTTATGAACTCTACATATCTTGCAGAAGTCATTTTGACACCCTCAGAGACCCTAAAGGGACCTTCCATCTCACTTCCCAATATTCCAGCCCAAATCATCACCCGCCAGCCTCCTGCTGACGTCGCAGTCTTGTTGGAACGTGGTGGCCACTCACCAACCATCCAGAAATCCATCCAATTAGACCATCCATTGTAGTACGGCATTCATCAGTGAATAAAACTATTTAAAAATGAGTCTTCATTTATTTCTACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73144 lncRNA downstream 46340 4231193 ~ 4236416 (-) True G64237
TU73245 lncRNA downstream 61828 4217753 ~ 4220928 (-) True G64332
TU73071 lncRNA downstream 223604 4057217 ~ 4059152 (-) True G64169
TU73070 lncRNA downstream 227424 4054537 ~ 4055332 (-) True G64168
TU72979 lncRNA downstream 321126 3957359 ~ 3958683 (-) True G64084
TU73187 lncRNA upstream 149822 4432907 ~ 4434141 (-) False CI01000010_04433165_04436747
TU73194 lncRNA upstream 151953 4437197 ~ 4437274 (-) True G64281
TU73193 lncRNA upstream 221308 4504393 ~ 4521646 (-) True G64280
TU73327 lncRNA upstream 294659 4577744 ~ 4578094 (-) True G64411
TU73336 lncRNA upstream 331080 4614165 ~ 4615086 (-) True G64418
CI01000010_04153653_04157398.mRNA mRNA downstream 124618 4151880 ~ 4158138 (-) True CI01000010_04153653_04157398
CI01000010_04028461_04031710.mRNA mRNA downstream 251046 4028297 ~ 4031710 (-) True CI01000010_04028461_04031710
CI01000010_03992093_03992619.mRNA mRNA downstream 289150 3991101 ~ 3993606 (-) True CI01000010_03992093_03992619
CI01000010_03961520_03974921.mRNA mRNA downstream 307835 3961419 ~ 3974921 (-) False CI01000010_03961520_03974921
CI01000010_03941555_03947042.mRNA mRNA downstream 335714 3941555 ~ 3947042 (-) True CI01000010_03941555_03947042
CI01000010_04311215_04316218.mRNA mRNA upstream 27649 4310734 ~ 4316671 (-) True CI01000010_04311215_04316218
CI01000010_04356379_04367982.mRNA mRNA upstream 73252 4356337 ~ 4368250 (-) True CI01000010_04356379_04367982
CI01000010_04374856_04376532.mRNA mRNA upstream 91423 4374508 ~ 4376946 (-) True CI01000010_04374856_04376532
CI01000010_04383043_04410672.mRNA mRNA upstream 99786 4382871 ~ 4412332 (-) True CI01000010_04383043_04410672
CI01000010_04426092_04431357.mRNA mRNA upstream 142339 4425424 ~ 4431387 (-) True CI01000010_04426092_04431357
TU73142 other downstream 46340 4229950 ~ 4236416 (-) False G64237
TU72970 other downstream 382845 3899741 ~ 3899911 (-) False G64080
TU72971 other downstream 382845 3899741 ~ 3899911 (-) True G64080
TU71288 other downstream 751104 3531516 ~ 3531652 (-) True G62599
TU70569 other downstream 2737705 1424425 ~ 1545051 (-) True G61965
TU73132 other upstream 329411 4613485 ~ 4613556 (-) True G64230
TU73495 other upstream 766070 5049155 ~ 5242926 (-) True G64564
TU73846 other upstream 1633172 5916257 ~ 5917011 (-) True G64877
TU73887 other upstream 1810604 6093689 ~ 6096480 (-) False G64918
TU74496 other upstream 3380606 7663691 ~ 7672343 (-) False G65453

Expression Profile