CI01000010_03544215_03547481 (PRRG1)


Basic Information

Item Value
gene id CI01000010_03544215_03547481
gene name PRRG1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 3543520 ~ 3547481 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_03544215_03547481.mRNA
ATGCGCCAAATCAGGACATTGGGACTCAACGGTGCACGTTTGGGTGGAACGGTGTTCCTGCCAGCAGATGCCGCACACTCAGTGCTGCGGAGGCTCCCGAGAGCAAACTTCTTCTTGGAGGAGATGAAACAAGGGAACATCCAGCGAGAATGCAGAGAGGAAATCTGCAATTATGAAGAAGCCAGGGAGGCGTTTGAGAATGATGAGAAAACTAGGCGATTCTGGGAGGAGTACCAGCGTGAGAGCAGCCCCAGGCCTGGCGGACTGGAGTCCATCGCTGGTGGCGTTCATTCCCTGTACCTGATCTTACCGCTGCTGCTGGTTTTGCTGCTCATTGCTGCGGTTTCCATCACGGTTTGGAGATGCCACTCACGCAAAAGATCCCAGCAAAGCCCTGCCATTGGGCGTCCACAAAGAGACACAACCCTATCTGTGGTGTCAATGGACCAGTGGGGTCGGGACTACCATCCTGACATCAGTCCTCACTCGGAGATCAGTGCCCACAGTAGCCCCGCTTACCCCGGCGCAGACCTCACACCTGGGCGGGGCAGTCGGGGTGACCCGCCTCCTTCATATGAGGAAGCTGTGGGCCATACAGATATACAGATTGAAGCAGAGCCTCCACCACAATATGAAGACATCATCAGTAACCACGGTAGCACGGTTGTCATCTCCCAGGGAAAGTGACGGATCTTCCAGGCAAGCCTCATGTAGAGATGCATTTTGAGGCCTCCACCAATACTCTAAACCCTTTTTTTACAACTGCACTACTTCTATGACAGGCTTTATTTTCAGTTCCAGCACTAACAAAACAGCTAAACTGCTTTATTTACACTCTTAAAAATAAAGGCATTAATGGTGTCATAAAGAACCTTTAACATCCATTGGACTAAAGTTTCTTTATAATGAAAAAAGGTACTTTAGATTTTTTTTAAATGTTCTTTACACTAAGAAAAAATGGTTCTTTTAAGAACTGTTCGCTGAAAGGTTTTTTGGAGAACCAAAAATGTTTTTTCTATGGCATTGGTGTGAAAATCACCTTTTGGAACCTTTATTTTTAAGAGTGTAGTATGAAGAGAAAACAACGAATGCAATTTTATTCCAGTACCGTAACTTACACATTGTTAAACATTGGGTTTCTTTGATTTTCAGAGACGATTGCAGAACTCATGACAGCTTGAATCCTGACCCAAGCCCAAATCCAATGACAATGAAGTACTGTAACATGAACAACTCACAATCACATTCTTCTTAGTTAGATGTTCTGAATTTCATAGGACTTACTAAGAAATGAGCTAAACAATTTTTTTTCCCCAGTTGTGGCCTCTTATTGGACCATTTAGAACAATAATACTAAATCATCAGATTCAGTGTGCAAAAAA

Function

symbol description
prrg1 Predicted to enable calcium ion binding activity. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human PRRG1 (proline rich and Gla domain 1).

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_03544215_03547481.mRNA True 1382 mRNA 0.44 3 3543520 3547481

Neighbor

gene id symbol gene type direction distance location
CI01000010_03527436_03530341 NA coding downstream 13179 3527408 ~ 3530359 (-)
CI01000010_03517080_03524389 FSD1 coding downstream 19131 3516860 ~ 3524389 (-)
CI01000010_03494576_03500309 MPND coding downstream 43211 3494306 ~ 3500309 (-)
CI01000010_03308058_03308511 NA coding downstream 233173 3307482 ~ 3310347 (-)
CI01000010_03204475_03207149 MPEG1.2 coding downstream 336371 3204435 ~ 3207149 (-)
CI01000010_03557384_03566580 TAB3 coding upstream 9451 3556932 ~ 3567714 (-)
CI01000010_03617450_03619486 NA coding upstream 69862 3617343 ~ 3619486 (-)
CI01000010_03787388_03880750 NA coding upstream 239907 3787388 ~ 3880750 (-)
CI01000010_03890095_03899058 SSBP3B, SSBP3, SSBP2 coding upstream 342614 3890069 ~ 3899058 (-)
CI01000010_03912179_03913373 NA coding upstream 364202 3911683 ~ 3913373 (-)
G62650 NA non-coding downstream 104940 3438346 ~ 3438580 (-)
G62648 NA non-coding downstream 106592 3436698 ~ 3436928 (-)
G62596 NA non-coding downstream 107412 3391336 ~ 3436108 (-)
G62636 NA non-coding downstream 140702 3402307 ~ 3402818 (-)
G62616 NA non-coding downstream 155282 3367235 ~ 3388238 (-)
G62682 NA non-coding upstream 51345 3598826 ~ 3599035 (-)
G62699 NA non-coding upstream 84057 3631538 ~ 3632004 (-)
G64119 NA non-coding upstream 372189 3919670 ~ 3919890 (-)
G64126 NA non-coding upstream 382135 3929616 ~ 3931626 (-)
CI01000010_03961520_03974921 SLC44A5B, SLC44A5, SLC44A5A non-coding upstream 409878 3961419 ~ 3974921 (-)
G61965 NA other downstream 1998469 1424425 ~ 1545051 (-)
G61888 NA other downstream 2297502 1244469 ~ 1246018 (-)
G61045 NA other downstream 2968009 572753 ~ 575511 (-)
G64237 NA other upstream 682469 4229950 ~ 4236416 (-)
CI01000010_04612793_04613017 SMIM15 other upstream 1065015 4612460 ~ 4613135 (-)
G64564 NA other upstream 1501674 5049155 ~ 5242926 (-)
G64877 NA other upstream 2368776 5916257 ~ 5917011 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035559 prrg1 coding NC_007119.7 CM002892.2 18588551 ~ 18601241 (+)