XLOC_035559 (prrg1)


Basic Information

Item Value
gene id XLOC_035559
gene name prrg1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 18588551 ~ 18601241 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069736
CTCTATTTAGTTAATTCTGGCCGGTTACTGCACCATGTGCGCATGCGCCAAATCAGGACATTGGGACTAACGGGGATACACGTTTGGGCGGAACGGGTCCAGATTTCCTGTTTGAAAAGCTGCAGGAATCATGGGAGCCGTGTTCCTGCCAGCAGATGCCGCGCACTCGGTGCTGCGGAGGCTCCCGAGAGCAAACTTCTTCTTGGAGGAGATGAAACAAGGGAACATTCAGCGAGAATGCAGAGAGGAAATCTGCAATTATGAAGAAGCCAGGGAGGCATTCGAGAACGATGAGAAAACGAGGCGATTTTGGGAGGAGTACCAACGAGAGAGTAGCCCCAGACCAGGAGGACTCGAGTCCATCGCTGGTGGCGTTCATTCCCTATACCTAATCCTACCCCTACTGCTGGTTTTGCTTCTTATCGCTGCAGTCTCCATCACAGTTTGGAGATGCCATTCCCGCAAAAGATCCCAGCAAAGCCCTGCCATCGGGCGTCCCCAAAGAGACACAACACTGTCCGTGGTGTCAATGGACCAATGGGGTCGGGACTACCATCCTGACATAAGCCCTCATTCGGAGATCAGTGCCCACAGTAGCCCTGCCTACCCCGGTGCTGACCTCACACCTGGGCGGGGAAGTCGGGGTGACCCACCCCCTTCATATGAAGAAGCTGTGGGCCATACGGATATACAGATTGAAGCAGAGCCTCCTCCTCAATATGAAGACATCATCAGCAACCACGGTGGCACAATTGTCATCTCCCAGGGAAAGTGACGGATCTTCCAGaagttcAACCACATGAATGTAAGCAAAGGATGAGGAAATTGGATGAACGGTCAAGAACTATCATTAAATCAAGAGTCTCAAATCTTAAATAAATATAGCCAGAGCAAATCACAAGTGTGTTTTTGAACAGGCCAACAAAAGCAAGTTATTATTGGGCGAGCTTACCGTTTTTCACTCTTAATAATGAAATCCGCTTGCGTTATTTCTAAATAAATCTACCATTTAGGGTTGCGAGGCataattattcctttaaaaatattttttgaatgcaGTATGGGTTAAATTTCAGGTAaagtgtttcttttttatgtttgtttttggaTAATTGACATTAGTTTTCAGGTCTGGCAGTTAACGGTCGTCTTTTACCTCAtactttttgtactacatttttTACTCAGAGTTTGTTTTTTTACCTCAGGCCCCAAACAAAAGCAAGAACATTTCAGAATAGGAACAAATTACAGGAACAAGCCGTTGAGGAAACATTCAGTATTATATATCAGGAAATAGTGTTTTTGGGCGTGATATTTTGTGTGGTTGTGAAAAAAAGGAATATAAAGGAAAACAGTTTGTACTTATTGAGTAACTGAGTGAATGCACTTTTATTTTCAGGGCACCGATCGCTCTATGTAAAGGAATATTAATTGATGTGTAAAGTAATGTGTGAAACGAGATGTGACgaataactaaaaactaaaaaaaacgtGGCAAATGCTGTTTGGATTTCTACAGTTTCTATTCTCAGTTCAGCAAGGAAAAGCTCATCGTACATAAATATGCAATAAAATGCATCACCAGCACTAACTCCAAGCTTTGTGAAAATCCAAATCTTAACAGTCTCAATTGCCGacagtggtttgtttttttaaaggtaatgtGAAATAAGGCTACCGTGGTTTAAAATCCAGTCTGATGATTTTGCTGTACATTTGCAGGCTGATATTTCTGTGGTAGTGAAGAGAGTGACTGACCGTGGTGGTGTTTATTGCTTAAGCCTTACTCAGAGATAGAtaaataatgtgtatatataaatgtattaagaacaaatttaattttttgtaacGATTGAGCTTGaactttatttgtaataaaagttTTTGGCCCTAATTTGTTTGAGTTCTGTCCTTTTATTTCTCATAAGGTCTTGTTTTACAGTTTGGGATCTTTTGATATGAAAGAATTGTAGGTTTAATCGGAAAACAACTAATAATTCTAACAATAATAAGACATTTGTCTTAAGAACCAAACTCAACATATCAGAGGAGTTTCTTTAATAATGAAGAATATTTCAAATTGCCAAATTAATTACATCTAGATTTTTTTTGCagaatttttgattaaataaaaacatgtttttcttgCCTGACAAGAATATATTTCTAAAAGCGATTAAATGTACaaagtttttagttttagttattttaaaggtTTCTATTTTCAACATCCATtacaatgaaaaatacaaaagCTCCACATTTAACACCTAACATGCTTTGCCTACCTCTAAACAAGCACACAAAGGTCATTCTAAGTAACTTATTAACTTAATGAGTAGATTTACATGCTAAAGTAACTTTCAATGGCCAGAATGACACAACGGTTCTGTAGACATTGGATCATTTTCAGTGTTTGACTGCATCAAATGCTAAGTTAAACACAGCATTTCCAATGCAATcggtttgtaactttttgatttagtggctaattcatatgaatctTACAATCTAATTCttaaaatttagtacgatttgctcatcacccaatgatggttgggtgcCACAGTTCCTTTTTAAATTAtaagaattcatacgaattagccactaaactgacaaaacgtaaaatactcatgagatctgatctttttttttttacttgcaaaaGTTTTAAGTCAGACCTGCATGCTTCTCaacttaaaaaatacatataaacagtgTTGGGGGAAAGTTACTTTCGAAAGTAaggcattacaatattgagttactcccccaaaaagtaTTACATTGTGTTACAAATGACTTTATATGGTAATACGTTACATTTCTTTTGtgttactatttttttaaattggaggcttgatctctttctgAACTTGCAGGGATTTTTTTCTTTGCAGGGAAACCTTTTCCTTTTTATTCCATTTTTTCAAAACAATCATTGCAGAAATTTAAAGCTCTGGCCTGCCGTCTTGGTTTCTGTTACCACAGGGAGTAAATTCTGTCATTGTGTATGTGATTTAAAGTGACtacattaaattcaattcagcaatttatttctAAAAGCTAATTATACTGaaaagtaacttgcattacattttttaaaactcaaatattactactttactcgttacttagaataGTATTACTATTACATAACTTTTGTTACTTATAATTCGTTactacaaaaataatatataaaagaattttctgtaaatactttttaaaaataatatatatacacacaacagttctgtctggttctcgaatctgattggctgatagctgtgatatatttaagtaatatcagcacccatacAGCTTTTTagcctttgtgtattactccgcccacatacagccagcaacaagcagataCTACAAATCTAAAGTTTCATTAGAAGCTTTAAAAGAAGCTTGCtcggctgtttaactgtcagcctATGACTTGAATTCAATGCggaggaaagtagttcctcatacaaaagggtttgtgagactccatgtttgattttgtttttatatacacaattatgcctgttgtgtaaacacaatatcacactcgtaacaGTGTAATATGGctgtggcctcgtgccaacgcacacttcccaccagtgccaatatacagccctATCGCACTGttacgagtgtgtgtgtatgtatgtgtgtatatatatatatacacacacacacacacacatatatatatatatatatatatatatatatatatatataatttttaaatattaaatatacatacatatatatatatatatatata
>TCONS_00069737
CGCATGCGCCAAATCAGGACATTGGGACTAACGGGGATACACGTTTGGGCGGAACGGGTCCAGATTTCCTGTTTGAAAAGCTGCAGGAATCATGGGAGCCGTGTTCCTGCCAGCAGATGCCGCGCACTCGGTGCTGCGGAGGCTCCCGAGAGCAAACTTCTTCTTGGAGGAGATGAAACAAGGGAACATTCAGCGAGAATGCAGAGAGGAAATCTGCAATTATGAAGAAGCCAGGGAGGCATTCGAGAACGATGAGAAAACGAGGCGATTTTGGGAGGAGTACCAACGAGAGAGTAGCCCCAGACCAGGAGGACTCGAGTCCATCGCTGGTGGCGTTCATTCCCTATACCTAATCCTACCCCTACTGCTGGTTTTGCTTCTTATCGCTGCAGTCTCCATCACAGTTTGGAGATGCCATTCCCGCAAAAGATCCCAGCAAAGCCCTGCCATCGGGCGTCCCCAAAGAGACACAACACTGTCCGTGGTGTCAATGGACCAATGGGGTCGGGACTACCATCCTGACATAAGCCCTCATTCGGAGATCAGTGCCCACAGTAGCCCTGCCTACCCCGGTGCTGACCTCACACCTGGGCGGGGAAGTCGGGGTGACCCACCCCCTTCATATGAAGAAGCTGTGGGCCATACGGATATACAGATTGAAGCAGAGCCTCCTCCTCAATATGAAGACATCATCAGCAACCACGGTGGCACAATTGTCATCTCCCAGGGAAAGTGACGGATCTTCCAGGCATGTTATCCAGCATCATGAAGAGATGCATTTTGAGGCCTCCGCCAATACTGTAAACTCTGTCATTTATTATTCACCTCTATTGGTTTGTTTTTATAACTAGTGCTTTGTGGGATGTGAACATGGTTtggcttttattttttacttcattaCTTCTACAGGCATTCAATTATTTTTCTAGTAAAATAGCTATTTCATTTCACATGCAGCAAAATTAACTAATGTGATCATGCTTCGGGGGGAGTATTACAGAAAGTTCCTAACTTTTAAATCTTATCATATCTGTTTGGAAACCGTCGTAATTTCAGTTAGGAGAAGAGCTATTACAGGACAGGATTTATTAAGTGTGTTATCTACAGATAGGAAGGTGATGTTACAAAAACATCCAAACTTGACAATAGTGCAAATTaacgttttattgttttttttatccattttgttTAGGCCAACTCATCAGCAGTTTGTGCAGTTTTGGTTGCTTATTAACAGACCTGAGAGTGGCTTGTCCAACTTGATGACACAATTTAAATTTCCTAACAACAGATAAGATGTAATTTTGTAAGATGGGGTAGAATCCCTCAAGACacaaatttgcacaaaaaaaaaa

Function

symbol description
prrg1 Predicted to enable calcium ion binding activity. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human PRRG1 (proline rich and Gla domain 1).

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-20 Predicted to enable calcium ion binding activity. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human PRRG1 (proline rich and Gla domain 1).

Ensembl:

ensembl_id ENSDARG00000043283

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069736 False 3784 mRNA 0.36 5 18588551 18601241
TCONS_00069737 True 1355 mRNA 0.45 4 18588590 18593534

Neighbor

gene id symbol gene type direction distance location
XLOC_035558 tab3 coding upstream 25572 18545185 ~ 18562979 (+)
XLOC_035557 alkal1 coding upstream 100330 18460807 ~ 18488221 (+)
XLOC_035556 NA coding upstream 176523 18410984 ~ 18412028 (+)
XLOC_035555 glis1b coding upstream 422874 18044257 ~ 18165677 (+)
XLOC_035554 ssbp3b coding upstream 551912 18010568 ~ 18036639 (+)
XLOC_035560 ccdc181 coding downstream 14697 18615938 ~ 18623104 (+)
XLOC_035561 fsd1 coding downstream 23417 18624658 ~ 18647363 (+)
XLOC_035562 BX247907.1 coding downstream 68996 18670237 ~ 18670362 (+)
XLOC_035563 NA coding downstream 108733 18709974 ~ 18733594 (+)
XLOC_035564 mpnd coding downstream 229518 18830759 ~ 18840694 (+)
XLOC_035551 NA non-coding upstream 620317 17962829 ~ 17968234 (+)
XLOC_035546 NA non-coding upstream 1181471 17368041 ~ 17407080 (+)
XLOC_035542 NA non-coding upstream 1462212 17086991 ~ 17126339 (+)
XLOC_035539 NA non-coding upstream 1529174 17055879 ~ 17059377 (+)
XLOC_035565 CR376858.1 non-coding downstream 422020 19023261 ~ 19023377 (+)
XLOC_035566 NA non-coding downstream 626594 19227835 ~ 19232675 (+)
XLOC_035573 NA non-coding downstream 1062213 19663454 ~ 19715690 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_03544215_03547481 PRRG1 coding CI01000010 null 3543520 ~ 3547481 (-)