XLOC_035554 (ssbp3b)


Basic Information

Item Value
gene id XLOC_035554
gene name ssbp3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 18010568 ~ 18036639 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069723
AGCATATAAATAACTTCTTTAgcattgcatttattatttttagtcaccAATATAAGCTATTTCAATCATTTTCAGGCCATACCAGTACATATAAGAGAATGATTCAGCTCAATTCCCTTGTTCGCATAACATAACGATTTCTCTCAGTTTTTTATTATCACAACAGCCATCACATTCATGCCTGAGAGTAAACAAATGCAGCACTAATTAGCCCAGCGCTTAACGCAACCCATCTTTAAAAGAATCACAGGAAATTGGAGGAAGGAACTATTTGGTCACCGCGCGCACGTCACTGCGGGGGCTTCACGCAAGAGAAATAGCGCTCGGCAATTGGCCACTTGCCCTTGTCAATCAAACCGCACGCTTCCACCCCCGCCCCGGTGGTCAAGGTTGGTTGAGAAGGCGTCAGTGTGTTTAGTTTGTGCAGTCGAACCTGGAGCAGTGACAGATGAATTGTCGAAAATAGAGGAAAAGGGAACGCGGGCGACTCTCCCGTGCACATACAAAAACATGTTTCCTAAAGGCAAAAGCTCCGTCGTGCCATCGGATGGTCAAGCTCGGGAAAAgTTAGCTTTGTATGTTTATGAGTATTTGTTACACATTGGTGCTCAGAAATCTGCTCAGACTTTCCTGTCAGAGATTCGATGGGAAAAGAACATCACGCTGGGAGACCCCCCTGGGTTCCTGCATTCCTGGTGGTGTGTTTTTTGGGACCTCTACTGTGCAGCTCCAGAGAGGAGAGACACATGTGAACATTCAAGCGAAGCCAAGGCTTTCCATGATTATAGTGCTGCTGCAGCCCCCAGTCCAGTTCTTGGGAATATGCCACCAGGAGATGGGATGCCCGGTGGACCAATGCCTCCTGGATTCTTCCAGGGCCCTCCAGGCTCGCAGGCGTCCCCTCACGCTCCTCCCCCCCCTAACAGCATGATGGGACCCCACGGCCAGCCGTTCATGTCCCCTCGCTTTGGGGGAGGACCAAGACCCCCTATCAGAATGGGCAACCAGCCCCCAGGTGGAGTTCCAGCCGCCCAGCCAATGCTCCCCAACATGGATCCTAGACTACAGGGGCCGATGCAGAGGATGAATGTTCCTAGAGGAATGGGTCCTATGGGCCCCGGACCCCAGGGTTTTGGAGGAGGGATGAGACCACCACACAACTCAATGGGTCCTGGGATGCCAGGAGTGAACATGGGGCCTGGAAATGGCAGACCACCGTGGCCAAATCCAAATGCCAACAATatGCCATATTCATCACCATCTCCTGGAGCATATGGTGGTCCACAAGGAGGGGGCCCTCCTGGAACACCTGGGATTGTCCCCAGTCCAGCAGACTCCAACAACTCCAGTGAAAACCTGTACACCATGATAAACTCGGGAGGTGGAGGTCGCAACAACTTTCCCATTGGCCCAGGCTCTGAGGGCCCTCTAGGGGCCATGGCAGGAATGGACCCGATGCATATGAATGGAGGTTCAGGAGACCTGGATGGTCTTCCAAAGAACTCTCCTAACAACATGAGTGGCATGAGCAATCCCCCCGGGACCCCCAGAGATGAAGATGTTGGAGGCAGCTACCTTCACTCCTTCCAGAATGAGAATCAGTACTCTCCTTCCATGACCATGAGCGTCTGATGCCAGTCTGTTTGCTCCATTCTGGAAACTCACAGTTGGCCATCAGTGACACAGACAGAGTACATGTACAGCAATTGGAATTGGGTGGGACTGACCTGCATCCTCACAAGTGGTCTCATGCAATATCAATATCATTTttgttgttactttttttttttttttttttcaatggctAGCAAATCTTTTCTTCTCTCCAAGAGCTGAAGATCTACATGTGACTCAATGCTCCTGGATTTAGTTTTCTTGTTCCCCCCTCTGAGGCCATCTCTTATTAAGAAGCGAAGTATGGTTACCGCTGACATAATTGCTGGATGTGTGTACATTTTGTGCCGAAGAGGAATAGCCGCAGTTCACTCTCTCGAAATCCGACATCCAACTTCAGCATGGTTTACACGTACCAAACTTCCTCCGACTTGACACTGAACTCTCATATGTGGCCTTGAATTCTGTGAATATTTTATTGCCTTTCGatgacctgttttgatttttctcCATCAAGTGATGAGAGAGTCCAGTCTTTTCTGAACACGGGAAGACTCACAGTTGTATTTTCCTCATACACTGTCATTTTTGTTTCGTCTTCAAGCATTATTAAGCAGCTGCTTTTAAGGAATAACTGCATTGACGGGTCCCATCCTGAATATGACTTACGATTTCGTTTTTCTGCACTGATTTcatgtttttcttgtttatttcttCTGAAATGTAACTGCTGTCTCAATCTTTGGTCAAAGACTGAATGATACGTCGATCCTCTCAGATGCTGACCCTTACAAACATACTACCTACGAGACCTTCTCAGAGCTCTTTGGGCAGGTGACTGGATTACGCACGCCTGGATGCGTCTCTCTGCAAAATGTTTGGCCGCTGTTGCGTTTTAATTATGTCATAATGAATTTGTGATGGTTAAAGATTACCCATatcatgtttttcttcttttatatATGTAATTCCCTGCCATGTGCCTCTTGTTTTAGCTCTGAAATGGTTTGATATTGCCTCAAAAGGACATCGCCTTGGTAAGCCAGACTCTAGTGTGTTTGGGGTTTTTTTTGTGTTAGGTTTTATTTGAGCAACATCAGACAAAGTAATAATACAGTTAGAATGGTAACTTATTCTATTTATACAGACATTTGgtcattgttttacattttagtagttgTTTTGCACTGCTTTTTTTAGCTTGTGCATCATACTTAACTGTGGGCTGAATAGGCTTGTTTGTATATTGACTACTAAATTATTTGGCTCCTTTCTaagtttttttgtaatgtttttcagtcattcataCTAATTCAAACAGGAAAGCAGAGTTTCAACCTGACTTCAGTTTCCAGCTTATTGCTTTTAAAGAGAAAAGGGAAAGTTCAATGTGAAGTTAACTTTGGAAAATGATGTAAAGCTGTTGATGTTCCCCGACTTCTTTAGGGTAGCGTCTCTCCAGAGGGCCAAGATCCAGCCATTTGATTTCCATGTAAATCATTCTCTTTGAATCAGTGAACCAGTTTCGAT
>TCONS_00069724
GTGTTTAGTTTGTGCAGTCGAACCTGGAGCAGTGACAGATGAATTGTCGAAAATAGAGGAAAAGGGAACGCGGGCGACTCTCCCGTGCACATACAAAAACATGTTTCCTAAAGGCAAAAGCTCCGTCGTGCCATCGGATGGTCAAGCTCGGGAAAAgTTAGCTTTGTATGTTTATGAGTATTTGTTACACATTGGTGCTCAGAAATCTGCTCAGACTTTCCTGTCAGAGATTCGATGGGAAAAGAACATCACGCTGGGAGACCCCCCTGGGTTCCTGCATTCCTGGTGGTGTGTTTTTTGGGACCTCTACTGTGCAGCTCCAGAGAGGAGAGACACATGTGAACATTCAAGCGAAGCCAAGGCTTTCCATGATTATAGTGCTGCTGCAGCCCCCAGTCCAGTTCTTGGGAATATGCCACCAGGAGATGGGATGCCCGGTGGACCAATGCCTCCTGGATTCTTCCAGCCGTTCATGTCCCCTCGCTTTGGGGGAGGACCAAGACCCCCTATCAGAATGGGCAACCAGCCCCCAGGTGGAGTTCCAGCCGCCCAGCCAATGCTCCCCAACATGGATCCTAGACTACAGGGGCCGATGCAGAGGATGAATGTTCCTAGAGGAATGGGTCCTATGGGCCCCGGACCCCAGGGTTTTGGAGGAGGGATGAGACCACCACACAACTCAATGGGTCCTGGGATGCCAGGAGTGAACATGGGGCCTGGAAATGGCAGACCACCGTGGCCAAATCCAAATGCCAACAATatGCCATATTCATCACCATCTCCTGGAGCATATGGTGGTCCACAAGGAGGGGGCCCTCCTGGAACACCTGGGATTGTCCCCAGTCCAGCAGACTCCAACAACTCCAGTGAAAACCTGTACACCATGATAAACTCGGGAGGTGGAGGTCGCAACAACTTTCCCATTGGCCCAGGCTCTGAGGGCCCTCTAGGGGCCATGGCAGGAATGGACCCGATGCATATGAATGGAGGTTCAGGAGACCTGGATGGTCTTCCAAAGAACTCTCCTAACAACATGAGTGGCATGAGCAATCCCCCCGGGACCCCCAGAGATGAAGATGTTGGAGGCAGCTACCTTCACTCCTTCCAGAATGAGAATCAGTACTCTCCTTCCATGACCATGAGCGTCTGATGCCAGTCTGTTTGCTCCATTCTGGAAACTCACAGTTGGCCATCAGTGACACAGACAGAGTACATGTACAGCAATTGGAATTGGGTGGGACTGACCTGCATCCTCACAAGTGGTCTCATGCAATATCAATATCATTTttgttgttactttttttttttttttttttcaatggctAGCAAATCTTTTCTTCTCTCCAAGAGCTGAAGATCTACATGTGACTCAATGCTCCTGGATTTAGTTTTCTTGTTCCCCCCTCTGAGGCCATCTCTTATTAAGAAGCGAAGTATGGTTACCGCTGACATAATTGCTGGATGTGTGTACATTTTGTGCCGAAGAGGAATAGCCGCAGTTCACTCTCTCGAAATCCGACATCCAACTTCAGCATGGTTTACACGTACCAAACTTCCTCCGACTTGACACTGAACTCTCATATGTGGCCTTGAATTCTGTGAATATTTTATTGCCTTTCGatgacctgttttgatttttctcCATCAAGTGATGAGAGAGTCCAGTCTTTTCTGAACACGGGAAGACTCACAGTTGTATTTTCCTCATACACTGTCATTTTTGTTTCGTCTTCAAGCATTATTAAGCAGCTGCTTTTAAGGAATAACTGCATTGACGGGTCCCATCCTGAATATGACTTACGATTTCGTTTTTCTGCACTGATTTcatgtttttcttgtttatttcttCTGAAATGTAACTGCTGTCTCAATCTTTGGTCAAAGACTGAATGATACGTCGATCCTCTCAGATGCTGACCCTTACAAACATACTACCTACGAGACCTTCTCAGAGCTCTTTGGGCAGGTGACTGGATTACGCACGCCTGGATGCGTCTCTCTGCAAAATGTTTGGCCGCTGTTGCGTTTTAATTATGTCATAATGAATTTGTGATGGTTAAAGATTACCCATatcatgtttttcttcttttatatATGTAATTCCCTGCCATGTGCCTCTTGTTTTAGCTCTGAAATGGTTTGATATTGCCTCAAAAGGACATCGCCTTGGTAAGCCAGACTCTAGTGTGTTTGGGGTTTTTTTTGTGTTAGGTTTTATTTGAGCAACATCAGACAAAGTAATAATACAGTTAGAATGGTAACTTATTCTATTTATACAGACATTTGgtcattgttttacattttagtagttgTTTTGCACTGCTTTTTTTAGCTTGTGCATCATACTTAACTGTGGGCTGAATAGGCTTGTTTGTATATTGACTACTAAATTATTTGGCTCCTTTCTaagtttttttgtaatgtttttcagtcattcataCTAATTCAAACAGGAAAGCAGAGTTTCAACCTGACTTCAGTTTCCAGCTTATTGCTTTTAAAGAGAAAAGGGAAAGTTCAATGTGAAGTTAACTTTGGAAAATGATGTAAAGCTGTTGATGTTCCCCGACTTCTTTAGGGTAGCGTCTCTCCAGAGGGCCAAGATCCAGCCATTTGATTTCCATGTAAATCATTCTCTTTGAATCAGTGAACCAGTTTCGATGTAAGATAAAGTTGTTCCCAAATTGT
>TCONS_00069725
TTAGTTTGTGCAGTCGAACCTGGAGCAGTGACAGATGAATTGTCGAAAATAGAGGAAAAGGGAACGCGGGCGACTCTCCCGTGCACATACAAAAACATGTTTCCTAAAGGCAAAAGCTCCGTCGTGCCATCGGATGGTCAAGCTCGGGAAAAgTTAGCTTTGTATGTTTATGAGTATTTGTTACACATTGGTGCTCAGAAATCTGCTCAGACTTTCCTGTCAGAGATTCGATGGGAAAAGAACATCACGCTGGGAGACCCCCCTGGGTTCCTGCATTCCTGGTGGTGTGTTTTTTGGGACCTCTACTGTGCAGCTCCAGAGAGGAGAGACACATGTGAACATTCAAGCGAAGCCAAGGCTTTCCATGATTATAGTGCTGCTGCAGCCCCCAGTCCAGTTCTTGGGAATATGCCACCAGGAGATGGGATGCCCGGTGGACCAATGCCTCCTGGATTCTTCCAGGGCCCTCCAGGCTCGCAGGCGTCCCCTCACGCTCCTCCCCCCCCTAACAGCATGATGGGACCCCACGGCCAGCCGTTCATGTCCCCTCGCTTTGGGGGAGGACCAAGACCCCCTATCAGAATGGGCAACCAGCCCCCAGGTGGAGTTCCAGCCGCCCAGCCAATGCTCCCCAACATGGATCCTAGACTACAGGGGCCGATGCAGAGGATGAATGTTCCTAGAGGAATGGGTCCTATGGGCCCCGGACCCCAGGGTTTTGGAGGAGGGATGAGACCACCACACAACTCAATGGGTCCTGGGATGCCAGGAGTGAACATGGGGCCTGGAAATGGCAGACCACCGTGGCCAAATCCAAATGCCAACAATatGCCATATTCATCACCATCTCCTGGAGCAT
>TCONS_00069726
TGAGGTGCAGACTTGGTCAATTTGGGTTTTTAGAGctctttaaaaattgTTAGCTTTGTATGTTTATGAGTATTTGTTACACATTGGTGCTCAGAAATCTGCTCAGACTTTCCTGTCAGAGATTCGATGGGAAAAGAACATCACGCTGGGAGACCCCCCTGGGTTCCTGCATTCCTGGTGGTGTGTTTTTTGGGACCTCTACTGTGCAGCTCCAGAGAGGAGAGACACATGTGAACATTCAAGCGAAGCCAAGGCTTTCCATGATTAT

Function

symbol description
ssbp3b Predicted to enable single-stranded DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in immature eye and nervous system. Orthologous to human SSBP3 (single stranded DNA binding protein 3).

GO:

id name namespace
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003697 single-stranded DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2801 Predicted to enable single-stranded DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in immature eye and nervous system. Orthologous to human SSBP3 (single stranded DNA binding protein 3).

Ensembl:

ensembl_id ENSDARG00000030155

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069723 False 3144 mRNA 0.45 17 18010568 18036613
TCONS_00069724 False 2688 mRNA 0.45 16 18010978 18036639
TCONS_00069725 False 859 mRNA 0.54 11 18010982 18031596
TCONS_00069726 True 268 mRNA 0.44 4 18011522 18014029

Neighbor

gene id symbol gene type direction distance location
XLOC_035553 si:dkey-267j14.7 coding upstream 17968 17990195 ~ 17992600 (+)
XLOC_035552 lrriq3 coding upstream 19991 17987215 ~ 17990577 (+)
XLOC_035551 NA coding upstream 42334 17962829 ~ 17968234 (+)
XLOC_035550 erich3 coding upstream 63363 17933475 ~ 17947205 (+)
XLOC_035549 slc44a5b coding upstream 92900 17838924 ~ 17917668 (+)
XLOC_035555 glis1b coding downstream 7618 18044257 ~ 18165677 (+)
XLOC_035556 NA coding downstream 374345 18410984 ~ 18412028 (+)
XLOC_035557 alkal1 coding downstream 424168 18460807 ~ 18488221 (+)
XLOC_035558 tab3 coding downstream 508546 18545185 ~ 18562979 (+)
XLOC_035559 prrg1 coding downstream 551912 18588551 ~ 18601241 (+)
XLOC_035546 NA non-coding upstream 603488 17368041 ~ 17407080 (+)
XLOC_035542 NA non-coding upstream 884229 17086991 ~ 17126339 (+)
XLOC_035539 NA non-coding upstream 951191 17055879 ~ 17059377 (+)
XLOC_035537 CR925863.1 non-coding upstream 1200315 16772174 ~ 16810253 (+)
XLOC_035562 BX247907.1 non-coding downstream 633598 18670237 ~ 18670362 (+)
XLOC_035563 NA non-coding downstream 673335 18709974 ~ 18733594 (+)
XLOC_035565 CR376858.1 non-coding downstream 986622 19023261 ~ 19023377 (+)
XLOC_035566 NA non-coding downstream 1191196 19227835 ~ 19232675 (+)

Expression


Co-expression Network