XLOC_035558 (tab3)


Basic Information

Item Value
gene id XLOC_035558
gene name tab3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 18545185 ~ 18562979 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069732
TGGAGGTACGCCTTAATAAAATACgatttttaaggtattttaataaataccatAAATAATAATAGGTACCGCGGCGCAACCATAAGTTATCTAATCTAGCAACAACCGATATGGAGGCATCCTATTATATTCACTGGATTTCCATAGAGTTAACGAGTTCGCACATATTTGTAATGTTCCacattaataatgacaaaaatatctACTAAATTTGACTGCGATAGTAGTTTTTGTTTGGCAATGTTTTAATTCCCGCCCCAGGTCGACAGAGGGCACGAATGTGCCGTCAATCGCTACTGCAGAAACTTCTAACCGGAACGAGAGAGGAAGAGAAATAGGCGTAAGTGAAGACGACAATTTTGTTGCGACTGTACTAGCCGACGTGTTCCCCGTAGAAACCCGGTGAATTGTTGTCATTTCCGATCACTTCACCCGTCCGGTGACACACCCCCTGTGAAAAGCCTTGCTTGGACGGTCAATGGCCGTGAGGCTCCGGCACACGGGGATGAGAGGAGAGCAGGTGCTGCGCTCCTGGCTGCGGACTCATTGACTCTCTCTTTGGGCTCATGATGGCGCAGGGAGGGCCTCAGTTGGACTATCAAATACTGCAGGACCTCAGGCAGCGCTTCCCAGAGATTCCAGAGACAGTAGTTTCTCAGTACCTTCTTCAGAACAACAATAATGCAGACCTCTGCTACCACCTGCTGGCTCAGGAGAGTAATCGATACCTGTATGAGGAGTACCACAGTCCAGATGACTTGCACTTAAACCGGAACCACATGCTGCGTATCAGTGTAGGCTACCCTGTTCCTGATGGGGTCAAAAATATTCCTGGTGGCCGAGCTTTGGTCCACAGTTCCAGCGACGGGCATATCGAGCATCCTCGAAGTGGCTTCCCCGAGCCTCTCTCTGCTCCCGCTACTGTGGCTCCATCACCCGGATATAACCCCTTCTTTAAAACTGATCAATCACGATCAAACATCCCCACGCCTCCACCTAGCATTCCAGGCATGTCGCCCACTTACCACCCAGTCTCACGTTACATGACTCCTATAACAGTGACCCTCTCCCAAAACATGCCTTCTGCCCCACAAGCTCTGCAAATCCCACCTGGTACCTATTGTACCAGCGGGAACACTGTGTACATGCGTCCATCACCGTCTCAAAGTCCTCAACCCACTCCCTGGTCCACATCTGGAACATCCATGTACCAGCAGTCTCCTTACGCCACCCCAACGTACCAGTCCCCCTACAGCTCTCCCCAACATCAGGTCCAGCAGCCGCCACAGGTGTTTCTACCCATAAGCCCTCCCACCCTTCCGGGGCTGTCCTACCAGCAAACCCCTGTGTCCCAGAGGCCTTTTATATCCTCCAAAGGCCCCATGAAGAACCAGATAGAGATCACATTGGAGGGACAGCGACCAAGGAGCAATTCCCCAGTACACACTCCACAGGGAGCACTCTATATGGCCACCAGCCCTTCCCCGAGCTCCCCATCGCGGGCCATCAGTATGGCAGGACCTCCAGGGGCCTCCATTCATCAAGGAATGTATGCCCACCAGGCTGTGGCGAGACCCCGGCCTACATCCTCTCCTCAGCCTGCCCCCTCCGCCTTCATTAAGATCAAAGTTTCGCCGAGGCAGGTGCAGGGTTCATCAAATTCTCCACCGGTAGAGACAGAATCACTTCTTAACATAGTGGACCAGGGCGAGCGGCATGGTGCCCCTCCTCCGATCCTGCCCATCTCTGCGCTGCCGGGGAGCATCGCCAACCAGATCAACTGCATGCCTAGACGGTCCAGCTCCGGCTCGGATGACTATGCATATACTCAAGCGCTACTCTTGCACCAGCGTGCTCGGATGGAGCGTCTGATGAAAGAACTCATGCTGGAGCGCCAGAAACTGGATCAGTTGAAGGCGGAAGTGAATGAAATGGAATTCGACGCCCTGCAGAGACGCTTCAGACGGGTGAACAGCACCAGCCTGATCCCTCGGCCCGAGGAGATGACCAAAATTCGGTCACAAAACAGACAGCTTCAGATTGACATTGATTGCACCTTGAAGGAGACGGACCTGCTGCAGTCCAGAGCTAAACCTACGGCTGTGCAACGAGACGAGGATTTCGAAGGCGCTCAATGGAACTGTGAAAGCTGCACTTTTCTTAACCACCCTGCTCTGCACCGCTGTGAACAATGCGAGATGCCGCGCAACACTTGA
>TCONS_00069733
CAATTTTGTTGCGACTGTACTAGCCGACGTGTTCCCCGTAGAAACCCGGTGAATTGTTGTCATTTCCGATCACTTCACCCGTCCGGTGACACACCCCCTGTGAAAAGCCTTGCTTGGACGGTCAATGGCCGTGAGGCTCCGGCACACGGGGATGAGAGGAGAGCAGGTGCTGCGCTCCTGGCTGCGGACTCATTGACTCTCTCTTTGGGCTCATGATGGCGCAGGGAGGGCCTCAGTTGGACTATCAAATACTGCAGGACCTCAGGCAGCGCTTCCCAGAGATTCCAGAGACAGTAGTTTCTCAGTACCTTCTTCAGAACAACAATAATGCAGACCTCTGCTACCACCTGCTGGCTCAGGAGAGTAATCGATACCTGTATGAGGAGTACCACAGTCCAGATGACTTGCACTTAAACCGGAACCACATGCTGCGTATCAGTGTAGGCTACCCTGTTCCTGATGGGGTCAAAAATATTCCTGGTGGCCGAGCTTTGGTCCACAGTTCCAGCGACGGGCATATCGAGCATCCTCGAAGTGGCTTCCCCGAGCCTCTCTCTGCTCCCGCTACTGTGGCTCCATCACCCGGATATAACCCCTTCTTTAAAACTGATCAATCACGATCAAACATCCCCACGCCTCCACCTAGCATTCCAGGCATGTCGCCCACTTACCACCCAGTCTCACGTTACATGACTCCTATAACAGTGACCCTCTCCCAAAACATGCCTTCTGCCCCACAAGCTCTGCAAATCCCACCTGGTACCTATTGTACCAGCGGGAACACTGTGTACATGCGTCCATCACCGTCTCAAAGTCCTCAACCCACTCCCTGGTCCACATCTGGAACATCCATGTACCAGCAGTCTCCTTACGCCACCCCAACGTACCAGTCCCCCTACAGCTCTCCCCAACATCAGGTCCAGCAGCCGCCACAGGTGTTTCTACCCATAAGCCCTCCCACCCTTCCGGGGCTGTCCTACCAGCAAACCCCTGTGTCCCAGAGGCCTTTTATATCCTCCAAAGGCCCCATGAAGAACCAGATAGAGATCACATTGGAGGGACAGCGACCAAGGAGCAATTCCCCAGTACACACTCCACAGGGAGCACTCTATATGGCCACCAGCCCTTCCCCGAGCTCCCCATCGCGGGCCATCAGTATGGCAGGACCTCCAGGGGCCTCCATTCATCAAGGAATGTATGCCCACCAGGCTGTGGCGAGACCCCGGCCTACATCCTCTCCTCAGCCTGCCCCCTCCGCCTTCATTAAGATCAAAGTTTCGCCGAGGCAGGTGCAGGGTTCATCAAATTCTCCACCGGTAGAGACAGAATCACTTCTTAACATAGTGGACCAGGGCGAGCGGCATGGTGCCCCTCCTCCGATCCTGCCCATCTCTGCGCTGCCGGGGAGCATCGCCAACCAGATCAACTGCATGCCTAGACGGTCCAGCTCCGGCTCGGATGACTATGCATATACTCAAGCGCTACTCTTGCACCAGCGTGCTCGGATGGAGCGTCTGATGAAAGAACTCATGCTGGAGCGCCAGAAACTGGATCAGTTGAAGGCGGAAGTGAATGAAATGGAATTCGACGCCCTGCAGAGACGCTTCAGACGGGTGAACAGCACCAGCCTGATCCCTCGGCCCGAGGAGATGACCAAAATTCGGTCACAAAACAGACAGCTTCAGATTGACATTGATTGCACCTTGAAGGAGACGGACCTGCTGCAGTCCAGAGgCAAGTTTGACTTGAGAACCATGAACAACTTTTATGATAATATTCAGCCTGGTCCTGTTGTACCTCCGAGAGCTAAACCTACGGCTGTGCAACGAGACGAGGATTTCGAAGGCGCTCAATGGAACTGTGAAAGCTGCACTTTTCTTAACCACCCTGCTCTGCACCGCTGTGAACAATGCGAGATGCCGCGCAACACTTGAGCTTCACCACAACTCTTTCCCACCGGCCATGAACCTCATTCTTCCTAATTTTCTGTTCCATCATGAAACATTCAGTTCCCTCCTATCAACCAACGATTCGGTTCCCTTGTGCCCTCAGCTTCACCCAGCAATAACTGAGCCGTACCACAcagaacaaataaatattatccaATCGGACTCACCCTGTGTTACCTCTTGAGGAGCTTCCTGCActtgtatttacttttttctaCTGAAAGATGCTTTAAAAGTGGAAGGAGGGTGACTTGACTTCACACAAACAAGTAAaagggattgattgattgattgatcgattggtTGAAGTGGACCGAGAAGCTGTGGTTTTTAAGAGGAGGGGCGGGACTTCCAAATGTGGAGGAGGAGGTGTGGTTTACCAAGCTACCATTCCAAGCAGAATAAGACTGCAGCGTTTACAAGAAAAGGCCCAAACAATCCCTCGCACAGGGCTTCTTTCACAACACGTTCATTGTATGGAGATACAAGCAGGGGCTGATTCATTTTAATGTAGACTTTACACTGTATGTGCTCACCACGAGCCCTTCTCATGAATGAAGAACACTACAAGACCTGCATATGAACCTATACCTGGTACTTTTATGCATATTATGCCACACTGTATTCTGTGTTGAAGATGTTGATTTCCTGTGCAAATGCCTCAAGTTGCTGTACTTAATAAAGGATCTGATTCTATGTGACGATA
>TCONS_00069734
GCTAACGTTTAATGAACAAccagtgtgtgttttctttctctttctcatccTGTGGATGATAACGTGCATGGGCGACTATTGTGTAAATCACAGTATGTACATGTCCTAAAAACGACGAGgaagtgtttgttttgtaatgaGCTGCTGCTGTCTGTGTTGATCCGCGGCTTTCTATCTTTGTCATCATGTACTTAAAAATAGCGTTGAGTTGTAACGTTAGCTCTTAAACGGATTTACCGGCGGCTCGTCGTGCTTTCACGGCGATCAGGAGGCACTAAACGCAGGGGATGAGAGGAGAGCAGGTGCTGCGCTCCTGGCTGCGGACTCATTGACTCTCTCTTTGGGCTCATGATGGCGCAGGGAGGGCCTCAGTTGGACTATCAAATACTGCAGGACCTCAGGCAGCGCTTCCCAGAGATTCCAGAGACAGTAGTTTCTCAGTACCTTCTTCAGAACAACAATAATGCAGACCTCTGCTACCACCTGCTGGCTCAGGAGAGTAATCGATACCTGTATGAGGAGTACCACAGTCCAGATGACTTGCACTTAAACCGGAACCACATGCTGCGTATCAGTGTAGGCTACCCTGTTCCTGATGGGGTCAAAAATATTCCTGGTGGCCGAGCTTTGGTCCACAGTTCCAGCGACGGGCATATCGAGCATCCTCGAAGTGGCTTCCCCGAGCCTCTCTCTGCTCCCGCTACTGTGGCTCCATCACCCGGATATAACCCCTTCTTTAAAACTGATCAATCACGATCAAACATCCCCACGCCTCCACCTAGCATTCCAGGCATGTCGCCCACTTACCACCCAGTCTCACGTTACATGACTCCTATAACAGTGACCCTCTCCCAAAACATGCCTTCTGCCCCACAAGCTCTGCAAATCCCACCTGGTACCTA
>TCONS_00069735
CAAATTCTCCACCGGTAGAGACAGAATCACTTCTTAACATAGTGGACCAGGGCGAGCGGCATGGTGCCCCTCCTCCGATCCTGCCCATCTCTGCGCTGCCGGGGAGCATCGCCAACCAGATCAACTGCATGCCTAGACGGTCCAGCTCCGGCTCGGATGACTATGCATATACTCAAGCGCTACTCTTGCACCAGCGTGCTCGGATGGAGCGTCTGATGAAAGAACTCATGCTGGAGCGCCAGAAACTGGATCAGTTGAAGGCGGAAGTGAATGAAATGGAATTCGACGCCCTGCAGAGACGCTTCAGACGGGTGAACAGCACCAGCCTGATCCCTCGGCCCGAGGAGATGACCAAAATTCGGTCACAAAACAGACAGCTTCAGATTGACATTGATTGCACCTTGAAGGAGACGGACCTGCTGCAGTCCAGAGCTAAACCTACGGCTGTGCAACGAGACGAGGATTTCGAAGGCGCTCAATGGAACTGTGAAAGCTGCACTTTTCTTAACCACCCTGCTCTGCACCGCTGTGAACAATGCGAGATGCCGCGCAACACTTGAGCTTCACCACAACTCTTTCCCACCGGCCATGAACCTCATTCTTCCTAATTTTCTGTTCCATCATGAAACATTCAGTTCCCTCCTATCAACCAACGATTCGGTTCCCTTGTGCCCTCAGCTTCACCCAGCAATAACTGAGCCGTACCACAcagaacaaataaatattatccaATCGGACTCACCCTGTGTTACCTCTTGAGGAGCTTCCTGCActtgtatttacttttttctaCTGAAAGATGCTTTAAAAGTGGAAGGAGGGTGACTTGACTTCACACAAACAAGTAAaagggattgattgattgattgatcgattggtTGAAGTGGACCGAGAAGCTGTGGTTTTTAAGAGGAGGGGCGGGACTTCCAAATGTGG

Function

symbol description
tab3 Predicted to enable kinase activity; metal ion binding activity; and ubiquitin binding activity. Predicted to be involved in positive regulation of I-kappaB kinase/NF-kappaB signaling. Predicted to act upstream of or within phosphorylation. Orthologous to human TAB3 (TGF-beta activated kinase 1 (MAP3K7) binding protein 3).

GO:

id name namespace
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04668 TNF signaling pathway
ko04621 NOD-like receptor signaling pathway
ko04657 IL-17 signaling pathway
ko05130 Pathogenic Escherichia coli infection
ko05132 Salmonella infection
ko05131 Shigellosis

ZFIN:

id description
ZDB-GENE-060503-408 Predicted to enable kinase activity; metal ion binding activity; and ubiquitin binding activity. Predicted to be involved in positive regulation of I-kappaB kinase/NF-kappaB signaling. Predicted to act upstream of or within phosphorylation. Orthologous to human TAB3 (TGF-beta activated kinase 1 (MAP3K7) binding protein 3).

Ensembl:

ensembl_id ENSDARG00000062063

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069732 False 2216 mRNA 0.52 6 18545185 18562258
TCONS_00069733 False 2655 mRNA 0.51 7 18545539 18562979
TCONS_00069734 False 902 mRNA 0.50 3 18545933 18555022
TCONS_00069735 True 936 mRNA 0.50 4 18555559 18562634

Neighbor

gene id symbol gene type direction distance location
XLOC_035557 alkal1 coding upstream 56964 18460807 ~ 18488221 (+)
XLOC_035556 NA coding upstream 133157 18410984 ~ 18412028 (+)
XLOC_035555 glis1b coding upstream 379508 18044257 ~ 18165677 (+)
XLOC_035554 ssbp3b coding upstream 508546 18010568 ~ 18036639 (+)
XLOC_035553 si:dkey-267j14.7 coding upstream 552585 17990195 ~ 17992600 (+)
XLOC_035559 prrg1 coding downstream 25572 18588551 ~ 18601241 (+)
XLOC_035560 ccdc181 coding downstream 52959 18615938 ~ 18623104 (+)
XLOC_035561 fsd1 coding downstream 61679 18624658 ~ 18647363 (+)
XLOC_035562 BX247907.1 coding downstream 107258 18670237 ~ 18670362 (+)
XLOC_035563 NA coding downstream 146995 18709974 ~ 18733594 (+)
XLOC_035551 NA non-coding upstream 576951 17962829 ~ 17968234 (+)
XLOC_035546 NA non-coding upstream 1138105 17368041 ~ 17407080 (+)
XLOC_035542 NA non-coding upstream 1418846 17086991 ~ 17126339 (+)
XLOC_035539 NA non-coding upstream 1485808 17055879 ~ 17059377 (+)
XLOC_035565 CR376858.1 non-coding downstream 460282 19023261 ~ 19023377 (+)
XLOC_035566 NA non-coding downstream 664856 19227835 ~ 19232675 (+)
XLOC_035573 NA non-coding downstream 1100475 19663454 ~ 19715690 (+)

Expression


Co-expression Network