XLOC_035561 (fsd1)


Basic Information

Item Value
gene id XLOC_035561
gene name fsd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 18624658 ~ 18647363 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069739
AGCGGACGACCTGGGATAAATATCCAGAGAATCTCTGAAACAGGTGCTGCATGCGGACAGCATGGACGACCAGAAGGAGTCACTGAGGAAGATTATCACTACACTGGCTCTGAAAAATGAGGAAATTCAAAATTTCATTTGCTCTCTAAAGCAGAGTCTGGAGAACCTAGAGGCGAATTCAAACCGAGTGCAGGAAGACCTGGAGTCAGAGTTTAGTTCGCTGCATTCGGTCCTGGATGACCTGAAAGAGGGAATGGTTACACGGATCAAGCAAGAAAGAGCCAGTCGCACATATGAGCTACAGagcCAGTTGGGCGCCTGCACCAAAGCCCTGGAGAGCTCAGAAGAACTGCTGGAATTTGCCAATCAGACGCTCTGCTCATCAGAGAATGACAGCTTCACTCAGGCGGCCAAAGACATAAAGGATAGTGTGACTATGGCTCCAGCGTTTCGTCTGTCCCTGAAAGCAAAGGCCAGTGACAGTATGAATCACATGATGGTGGACTTCACTCACGAAAGAAACCTGCTTCAGTCCATCACGTTTCTTCCAGTGCCAGCCACTCCCGAAATTCATGTTGCCGATTGCCAGGTGTTTGATAACACAGTGACAGTGGTGTGGACCTTACCGGAACCCGACTCCAAAATCGACCACTACATCCTGGAGCATCGGAAAACCAATCATGAGGGTCCACCGCGGGCTCGTGAGGACTATCCCTGGATGGTGGTGGAGGGAATTAAAGAAACTGAGTACACACTCACAGGCGTTCGTTTTGACACGCGCTACATGACCTTTAGAGTGAAGGCATGTAATAAAGCAGTGGCGGGTGAATTCTCAGAGCCGGTTACTCTAGAAACACATGCATTCGTCTTTAAGCTGGACGCAAGTTCGTCCCATCAGAACCTGAAGGTAGAGGACCTCAGTGTAGAATGGGACAGCAGTGGTGGGAAGGTTGCTGTTCAGGACATCCGTAAGGAGAAGAACAGGACCAACTCTCCTATGCATTCTCCTGCCAgGACAGCCATGATGTCTCCTAAAAGAGCGCCGTCTGCTAGAGTGGGCCGAGATCGCTTCACAGCAGAGTCCTACACCGTCCTGGGAGACACCATGATCGACGCGGGCCAGCATTATTGGGAGGTGCGCTTTGATAAGGAGAGCAAGGCGTTTGCAGCAGGAGTGGCCTTGAGGTCTCTGGGTCGTTTTGATCAGCTCGGGAAGAGCAACGCGTCCTGGTGCATCCATCTGAACAACTGGCTTCAGCAGAGCCTCACAGCCAAGCACAATAATAAAGCCAGAACACTGGACTGCTCCATTCCTGACCGCATCGGCATCTACTGCAACTATGAAGAGGGCACATTGTCTTTCTACAACTCCAGAAATAAAACTCTCCTTCATACCTTTAGAACCAAGTTCCAGCAGCCTGTTATACCAGCCTTTATGGTGTGGAATGGGAGTTTCTCGGTGCAGACGGGCCTTCAGGTGCCCAGTATCGTGTTGAGCGGCCAGAAAAGAAACAGTAACACAAGCAGTTCTAATGCCAGCCTTACCTAACTCACATTCTCCAGAACTGCTGCACATGTGTGGAGAACACCTGGCTAACTTGGACACAACAAGCCTGGAGGCTCATCATTCATCAGTATAAGGGAGAAGCTGCCTCGCTATAGCCTTCCTCATTCCTTTTAGCTCACTGATCTGGATCCTGTGCCTTTCAGTGTCCTGAATGAAGACGTGACACGGGGTTTACTCCATTTCAACATGCAACCAGCTTAAATAGCCTGAGGGCCAAAAGTATTGTACACGTTTTAGCATTTGTTCATTCACGAGCCACATTTTCAACACTTATTTTAACGCAACAGCAGCAGCATGTTGGGGTTTTAAATCTCCAATGAAAGCGTATTATATTTACACACTGAATGTCTTTAATGATATGCCTCCAGTATCTGCGACGTTTTTAAACTAGTATCAAGGTAGCACAATTATTCGCAAGCTAAATCATAGAGATCAAATGCCTTTTATAGAATGTATTCATTCAGCAGTTCCAGCATCTGAGGAGGAAGGCGGTGTAACTAATCATTTGGTCAAGCACGgtcaatgatgtgtgtgtgtgtgtttttgtgcgggTGTGT

Function

symbol description
fsd1 Acts upstream of or within Notch signaling pathway and cilium assembly. Predicted to be located in several cellular components, including cleavage furrow; microtubule cytoskeleton; and nucleus. Orthologous to human FSD1 (fibronectin type III and SPRY domain containing 1).

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0060271 cilium assembly biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0032154 cleavage furrow cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-060503-218 Acts upstream of or within Notch signaling pathway and cilium assembly. Predicted to be located in several cellular components, including cleavage furrow; microtubule cytoskeleton; and nucleus. Orthologous to human FSD1 (fibronectin type III and SPRY domain containing 1).

Ensembl:

ensembl_id ENSDARG00000062017

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069739 True 2124 mRNA 0.48 13 18624658 18647363

Neighbor

gene id symbol gene type direction distance location
XLOC_035560 ccdc181 coding upstream 1554 18615938 ~ 18623104 (+)
XLOC_035559 prrg1 coding upstream 23417 18588551 ~ 18601241 (+)
XLOC_035558 tab3 coding upstream 61679 18545185 ~ 18562979 (+)
XLOC_035557 alkal1 coding upstream 136437 18460807 ~ 18488221 (+)
XLOC_035556 NA coding upstream 212630 18410984 ~ 18412028 (+)
XLOC_035562 BX247907.1 coding downstream 22874 18670237 ~ 18670362 (+)
XLOC_035563 NA coding downstream 62611 18709974 ~ 18733594 (+)
XLOC_035564 mpnd coding downstream 183396 18830759 ~ 18840694 (+)
XLOC_035565 CR376858.1 coding downstream 375898 19023261 ~ 19023377 (+)
XLOC_035566 NA coding downstream 580472 19227835 ~ 19232675 (+)
XLOC_035551 NA non-coding upstream 656424 17962829 ~ 17968234 (+)
XLOC_035546 NA non-coding upstream 1217578 17368041 ~ 17407080 (+)
XLOC_035542 NA non-coding upstream 1498319 17086991 ~ 17126339 (+)
XLOC_035539 NA non-coding upstream 1565281 17055879 ~ 17059377 (+)
XLOC_035573 NA non-coding downstream 1016091 19663454 ~ 19715690 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_03517080_03524389 FSD1 coding CI01000010 null 3516860 ~ 3524389 (-)