XLOC_035556


Basic Information

Item Value
gene id XLOC_035556
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 18410984 ~ 18412028 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071922
CAACAGCCAAAAGACCGTTTGCTCACCCTTCACCACAAGAGAAGCAGTTGTGACCAGGCTTCCAGCACAACATTTGTAGGTCCCGCTGTCTTGAGCTGTTAATTCATGAACATTGAGCTGTAGTTTACAGCCATCctcttttatttcatatttttgacCTGGCTTCAGCAACGCTGTTCCTTTCTTCCACTGCACTGAGACTCCAGGTTTAGAGAGCTCACAGCGAAATATAACTGTATTACCCTCCTCTGCTTCTTGGTTTTGTAGCACATCACAGAAAAACAATGGCTTTTCTGGgaagggaaataaaaaaatatcaacaaaaaaaaaatggatacaATAGCAAGTAATGAATTCATTCTTATCCCAAAATTCAAAATGTGGCATTAAGAATGGTGTTCTCACCTTTCACCAGAAGAGATGCAGTTGTGATCAGGCTTCCAGCACAACATGTGTAGGTTCCACTGTCCTGAGCTGTTAACTCATGAATCTGAAGCTGTTGCTGACAACCGTCCTGTTTTATCTCATATCTTTTACTCAGTTTTAAAAGCACAGTTCCTTTCTTCCACTGCACTGAGACTCCAGGTTTCGAGAGCTCACAAGACAAAATTGCAGTCTTACCCTCTTCTGCTTCATGGTTTTGGAGCTCCTCAGAGAAGAACAAGGGGGGTTCTAGAGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071922 True 679 lncRNA 0.42 2 18410984 18412028

Neighbor

gene id symbol gene type direction distance location
XLOC_035555 glis1b coding upstream 245307 18044257 ~ 18165677 (+)
XLOC_035554 ssbp3b coding upstream 374345 18010568 ~ 18036639 (+)
XLOC_035553 si:dkey-267j14.7 coding upstream 418384 17990195 ~ 17992600 (+)
XLOC_035552 lrriq3 coding upstream 420407 17987215 ~ 17990577 (+)
XLOC_035551 NA coding upstream 442750 17962829 ~ 17968234 (+)
XLOC_035557 alkal1 coding downstream 48779 18460807 ~ 18488221 (+)
XLOC_035558 tab3 coding downstream 133157 18545185 ~ 18562979 (+)
XLOC_035559 prrg1 coding downstream 176523 18588551 ~ 18601241 (+)
XLOC_035560 ccdc181 coding downstream 203910 18615938 ~ 18623104 (+)
XLOC_035561 fsd1 coding downstream 212630 18624658 ~ 18647363 (+)
XLOC_035546 NA non-coding upstream 1003904 17368041 ~ 17407080 (+)
XLOC_035542 NA non-coding upstream 1284645 17086991 ~ 17126339 (+)
XLOC_035539 NA non-coding upstream 1351607 17055879 ~ 17059377 (+)
XLOC_035537 CR925863.1 non-coding upstream 1600731 16772174 ~ 16810253 (+)
XLOC_035562 BX247907.1 non-coding downstream 258209 18670237 ~ 18670362 (+)
XLOC_035563 NA non-coding downstream 297946 18709974 ~ 18733594 (+)
XLOC_035565 CR376858.1 non-coding downstream 611233 19023261 ~ 19023377 (+)
XLOC_035566 NA non-coding downstream 815807 19227835 ~ 19232675 (+)
XLOC_035573 NA non-coding downstream 1251426 19663454 ~ 19715690 (+)

Expression


Co-expression Network