XLOC_035542


Basic Information

Item Value
gene id XLOC_035542
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 17086991 ~ 17126339 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072172
GCTAAAGTGGGTGTGGCCAAGAAGACGAGTAGCAGGTGTAAAATGCCATTCCTTGGACGAATAGCGAATAATTCAGACACCGAGGATAACTAAGGTTTCACATCTTGCCCTTGGTGAAAGTTTCTTACTACTGAAAGATGATGCTCAGCCCACTCAGTGATTTGAACACGAAGCACCCGGCAGAGGCAGACAGAATCCTGGATCTTCCTCATTAAGGTCTGAGGAGGATTGTCAGGAACAGACATGTCGAAGCCCCCCTAAAATGACACACAACCCAAACAGCAGCTGAAATGCTGCAACAACACCAGGAGCAAATGTGTCGTGTCAGTGTGTCACATCTGGTTTGTGAGCGCAGACATTGTAGCCAGAGGCTTTTTCTTTCAGTAAACTGATGTTCTTACAGACGTACTTATGAAATACATTTGCAGCTGGCACTATGGTGTGCCAGCTCAGGTGCTTGGAAACCCTAAAAACAGAGACACACCATCGGGAGCACCGGGTACAGAAACTTGATATACTTCATAAACATTATGTAACTACAAGACACTTTGTGTAAACgtgtttaagaaatatttatcTTCCCTGCATTTGGTGGGCTTGTGTAATGACAACAGTCTTAGCATATATGGTTTGGATTGGTTTGTCTGGCAAAACTAAACTAAAGAGATTTGTAAATCTAGTTCAGGAAGCCAAGATTGCAGTGATGAGCTGCAGATCCTCATACAATGGCATTCAGTGCACCAATATTCTTCACTTGGGTTTATGCGCAAATGTCATTACTTTGGTAAGagagttttcaccaaaataccaTAGATCAGAGgtcatgaattagtatgttgtgTATACAAATTCGGCCTTTGGTAAGAACCGTATGGACCCCGGCTCACTGCACATTGGGACACTGATGGCAGGGACGTAGAATTAGAATGGATGGCGAGGATGTGTCCCCACAAATATCCACCGActccaccaataatttaattcacttaaaaacgTGCTGTCAACATTAAAGAGCCACTATCAAAGGTTTTTGAATATTACCTTCTATGCAGTGTGCAACACaactctaagtgaatgaaaacatccagctgagatTTAAATCTGAtagtgcaccttgtttaaaaatatcagttttttttaataaaagatttgaCTCAGAG
>TCONS_00072173
AAGAAGACGAGTAGCAGGTGTAAAATGCCATTCCTTGGACGAATAGCGAATAATTCAGACACCGAGGATAACTAAGGTTTCACATCTTGCCCTTGGTGAAAGTTTCTTACTACTGAAAGCCCACTCAGTGATTTGAACACGAAGCACCCGGCAGGCAAAGGGAGTTCCCAAACTCTGGATCCTGTTTTCCTCTTTTCCATTTCACAGCATTGTTTGCAGAAGCAGGCGGTCATGCTGGATGATCAGGAGGTCTCACCGTGGCCTGGCCTTCTTTTCCCAGCACTCGGAACATTGCCTGGCTGAAGTGACCTCACCTATTGTTCCACCTCACTTTCAAACACACTGAACACCCGCCTGAGACAAAGGTGACGTCCTCGTTTGCCTTGCTGCTAAAGGATAAGAGCTGCATGGATTTTGGTGTGCAAAATCTAACGCTGTTAGAAACAAAACtcacaaaacaaatatatatgtatatctttttttttgtattgatgtTGTTTCCTGCACAGACTGAGTGTTTTGCTTTTTATGACCTCAGTGTATCGTATGAAGccatgtgtatttattttgttttgcttttatatttgtgtttgactctcaaagtgctggtgctattgacttgcattttatgaatcactaaGGACCAAAGTTTTAgctaaaatcttttttaaaggtctcatga
>TCONS_00069707
AATTCAGACACCGAGGATAACTAAGGTTTCACATCTTGCCCTTGGTGAAAGTTTCTTACTACTGAAAGGTAGGTTGAGGGCACTCTGACAACTTCGGTTTTACAAGTAGAAGGAGATTTCCTGCTGGCGATCTGCAAGACTGATGCTCTGTAATTGGGCACAGATGATGCTCAGCCCACTCAGTGATTTGAACACGAAGCACCCGGCAGAGGCAGACAGAATCCTGGATCTTCCTCATTAAGGTCTGAGGAGGATTGTCAGGAACAGACATGTCGAAGCCCCCCTAAAATGACACACAACCCAAACAGCAGCTGAAATGCTGCAACAACACCAGGAGCAAATGTGTCGTGTCAGTGTGTCACATCTGGTTTGTGAGCGCAGACATTGTAGCCAGAGGCTTTTTCTTTCAGTAAACTGATGTTCTTACAGACGTACTTATGAAATACATTTGCAGCTGGCACTATGGTGTGCCAGCTCAGGTGCTTGGAAACCCTAAAAACAGAGACACACCATCGGGAGCACCGGGTACAGAAACTTGATATACTTCATAAACATTATGTAACTACAAGACACTTTGTGTAAACgtgtttaagaaatatttatcTTCCCTGCATTTGGTGGGCTTGTGTAATGACAACAGTCTTAGCATATATGGTTTGGATTGGTTTGTCTGGCAAAACTAAACTAAAGAGATTTGTAAATCTAGTTCAGGAAGCCAAGATTGCAGTGATGAGCTGCAGATCCTCATACAATGGCATTCAGTGCACCAATATTCTTCACTTGGGTTTATGCGCAAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000094703

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072172 False 1160 lncRNA 0.42 4 17086991 17097453
TCONS_00072173 False 682 lncRNA 0.42 4 17087009 17126339
TCONS_00069707 True 798 processed_transcript 0.44 3 17087060 17097065

Neighbor

gene id symbol gene type direction distance location
XLOC_035541 plk2b coding upstream 796 17078692 ~ 17086195 (+)
XLOC_035540 si:dkey-190g11.3 coding upstream 11593 17069577 ~ 17075398 (+)
XLOC_035539 NA coding upstream 27614 17055879 ~ 17059377 (+)
XLOC_035538 pde4d coding upstream 42277 16990120 ~ 17044714 (+)
XLOC_035537 CR925863.1 coding upstream 276738 16772174 ~ 16810253 (+)
XLOC_035543 mier3b coding downstream 17162 17143501 ~ 17157074 (+)
XLOC_035544 cenph coding downstream 41537 17167876 ~ 17173694 (+)
XLOC_035545 dimt1l coding downstream 58263 17184602 ~ 17193041 (+)
XLOC_035546 NA coding downstream 241702 17368041 ~ 17407080 (+)
XLOC_035547 si:ch73-70k4.1 coding downstream 402812 17529151 ~ 17535031 (+)
XLOC_035533 NA non-coding upstream 365615 16719107 ~ 16721376 (+)
XLOC_035531 NA non-coding upstream 473520 16609678 ~ 16613471 (+)
XLOC_035530 NA non-coding upstream 509182 16570336 ~ 16577809 (+)
XLOC_035551 NA non-coding downstream 836490 17962829 ~ 17968234 (+)
XLOC_035556 NA non-coding downstream 1284645 18410984 ~ 18412028 (+)
XLOC_035562 BX247907.1 non-coding downstream 1543898 18670237 ~ 18670362 (+)
XLOC_035563 NA non-coding downstream 1583635 18709974 ~ 18733594 (+)
XLOC_035529 NA non-coding upstream 504949 16563953 ~ 16582042 (+)

Expression


Co-expression Network