XLOC_035544 (cenph)


Basic Information

Item Value
gene id XLOC_035544
gene name cenph
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 17167876 ~ 17173694 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069709
GTCCCCACTTCCTGGCGGCAGTTTCAGACAGGATTGGAATCGCGCGACTAGAAATCTTTCAAcaacaaacagtaaacacaaCCCACATACAAAGATGAGTTCCAGTAACGTTAATCATGATGCCCTCGCTTCAGATGTTGACACTCCTAGAAGGGACAACAGTCTTCCTGATCCATCTTCAGTCTCCGATGGGGTGACACCCACAAGCttattaaaGATGAAAGAAATAATGGAAAAtcagtgttttgaaatgaatgttAAAGTCAGCATGGgaaaacacagagaGTCATGTGAAGCTGAGGCAGATCTATCTAAGTATGAAAGTGAAATAGAGCAAGCAAGACTCTCACACTTCAACAAAACACTGGTGTTGAACAGaATGCAGATTTGGAGCGCCGTTATTGAAAAGATGATTCAGAATGGGGCAGATGCTGAgGAACTAAaggaactgaccaatcagaactctGAGATTTGTGAAAAGACCATCCAAATTTTAAAGGAAACACGAGAGCTTCAGGACCAGATTACAGATGTCCAAAAGCAAAGACTTGATCTAAAAGGACAGATAAAGAAAAAGATGCAGGAGATAAACGAGTTGAAGCAGGAGAAGGAAAACCAGGGAGAGGTTCAGCAGAAAACCAAGGAAAGAGCTGAGGCTGTTCTGCAGAAATACCAGAGGATCACCACTATCTTGCAAAATGTGCTCCGGGGAATTATACTGGCTAGTAAAGTAAACTGGAGAGAGGATCCTAAGTTAAGTGACATTGTGATGAAACTGGAACACATACCCAGCTAAAGAGGAAACCTTTAAACAGAGCTCTTCAATGTAAATACTCCAGGTTGCCACATTCAGGGTAATGTTTTGTACATTTCTGTAAAGTCATCTGAAAGGATGTTTTTCTTGTATATTCAGGCTTTTTATTGCAATTCATTTTAGAGTTTTAAAAACATCCTTAATGTGAGAAAGGTGATACATGCTTAGTTTTCAttctttttaaattcattttagacTAATCCTTTAATTAAAGTCAATATGAAACCAA
>TCONS_00069710
ATGTGACGTAACTGTTACTGACGACATACAAAGATGAGTTCCAGTAACGTTAATCATGATGCCCTCGCTTCAGATGTTGACACTCCTAGAAGGGACAACAGTCTTCCTGATCCATCTTCAGTCTCCGATGGGGTGACACCCACAAGCttattaaaGATGAAAGAAATAATGGAAAAtcagtgttttgaaatgaatgttAAAGTCAGCATGGgaaaacacagagaGTCATGTGAAGCTGAGGCAGATCTATCTAAGTATGAAAGTGAAATAGAGCAAGCAAGACTCTCACACTTCAACAAAACACTGGTGTTGAACAGaATGCAGATTTGGAGCGCCGTTATTGAAAAGATGATTCAGAATGGGGCAGATGCTGAgGAACTAAaggaactgaccaatcagaactctGAGATTTGTGAAAAGACCATCCAAATTTTAAAGGAAACACGAGAGCTTCAGGACCAGATTACAGATGTCCAAAAGCAAAGACTTGATCTAAAAGGACAGATAAAGAAAAAGATGCAGGAGATAAACGAGTTGAAGCAGGAGAAGGAAAACCAGGGAGAGGTTCAGCAGAAAACCAAGGAAAGAGCTGAGGCTGTTCTGCAGAAATACCAGAGGATCACCACTATCTTGCAAAATGTGCTCCGGGGAATTATACTGGCTAGTAAAGTAAACTGGAGAGAGGATCCTAAGTTAAGTGACATTGTGATGAAACTGGAACACATACCCAGCTAA

Function

symbol description
cenph Predicted to enable kinetochore binding activity. Acts upstream of or within chromosome segregation; mitotic spindle organization; and negative regulation of cysteine-type endopeptidase activity. Predicted to be located in chromosome, centromeric region. Predicted to be active in kinetochore and nucleus. Is expressed in head. Orthologous to human CENPH (centromere protein H).

GO:

id name namespace
GO:0007052 mitotic spindle organization biological_process
GO:0007059 chromosome segregation biological_process
GO:2000117 negative regulation of cysteine-type endopeptidase activity biological_process
GO:0051382 kinetochore assembly biological_process
GO:0000776 kinetochore cellular_component
GO:0005634 nucleus cellular_component
GO:0043515 kinetochore binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-081104-340 Predicted to enable kinetochore binding activity. Acts upstream of or within chromosome segregation; mitotic spindle organization; and negative regulation of cysteine-type endopeptidase activity. Predicted to be located in chromosome, centromeric region. Predicted to be active in kinetochore and nucleus. Is expressed in head. Orthologous to human CENPH (centromere protein H).

Ensembl:

ensembl_id ENSDARG00000094892

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069709 False 1043 mRNA 0.39 10 17167876 17173694
TCONS_00069710 True 735 mRNA 0.41 10 17168114 17173447

Neighbor

gene id symbol gene type direction distance location
XLOC_035543 mier3b coding upstream 10802 17143501 ~ 17157074 (+)
XLOC_035542 NA coding upstream 41537 17086991 ~ 17126339 (+)
XLOC_035541 plk2b coding upstream 81681 17078692 ~ 17086195 (+)
XLOC_035540 si:dkey-190g11.3 coding upstream 92478 17069577 ~ 17075398 (+)
XLOC_035539 NA coding upstream 108499 17055879 ~ 17059377 (+)
XLOC_035545 dimt1l coding downstream 10908 17184602 ~ 17193041 (+)
XLOC_035546 NA coding downstream 194347 17368041 ~ 17407080 (+)
XLOC_035547 si:ch73-70k4.1 coding downstream 355457 17529151 ~ 17535031 (+)
XLOC_035548 si:ch211-150o23.3 coding downstream 601553 17775247 ~ 17784723 (+)
XLOC_035549 slc44a5b coding downstream 665230 17838924 ~ 17917668 (+)
XLOC_035537 CR925863.1 non-coding upstream 357623 16772174 ~ 16810253 (+)
XLOC_035533 NA non-coding upstream 446500 16719107 ~ 16721376 (+)
XLOC_035531 NA non-coding upstream 554405 16609678 ~ 16613471 (+)
XLOC_035551 NA non-coding downstream 789135 17962829 ~ 17968234 (+)
XLOC_035556 NA non-coding downstream 1237290 18410984 ~ 18412028 (+)
XLOC_035562 BX247907.1 non-coding downstream 1496543 18670237 ~ 18670362 (+)
XLOC_035563 NA non-coding downstream 1536280 18709974 ~ 18733594 (+)

Expression


Co-expression Network