RNA id: TCONS_00069710


Basic Information

Item Value
RNA id TCONS_00069710
length 735
RNA type mRNA
GC content 0.41
exon number 10
gene id XLOC_035544
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 17167876 ~ 17173694 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTGACGTAACTGTTACTGACGACATACAAAGATGAGTTCCAGTAACGTTAATCATGATGCCCTCGCTTCAGATGTTGACACTCCTAGAAGGGACAACAGTCTTCCTGATCCATCTTCAGTCTCCGATGGGGTGACACCCACAAGCttattaaaGATGAAAGAAATAATGGAAAAtcagtgttttgaaatgaatgttAAAGTCAGCATGGgaaaacacagagaGTCATGTGAAGCTGAGGCAGATCTATCTAAGTATGAAAGTGAAATAGAGCAAGCAAGACTCTCACACTTCAACAAAACACTGGTGTTGAACAGaATGCAGATTTGGAGCGCCGTTATTGAAAAGATGATTCAGAATGGGGCAGATGCTGAgGAACTAAaggaactgaccaatcagaactctGAGATTTGTGAAAAGACCATCCAAATTTTAAAGGAAACACGAGAGCTTCAGGACCAGATTACAGATGTCCAAAAGCAAAGACTTGATCTAAAAGGACAGATAAAGAAAAAGATGCAGGAGATAAACGAGTTGAAGCAGGAGAAGGAAAACCAGGGAGAGGTTCAGCAGAAAACCAAGGAAAGAGCTGAGGCTGTTCTGCAGAAATACCAGAGGATCACCACTATCTTGCAAAATGTGCTCCGGGGAATTATACTGGCTAGTAAAGTAAACTGGAGAGAGGATCCTAAGTTAAGTGACATTGTGATGAAACTGGAACACATACCCAGCTAA

Function

GO:

id name namespace
GO:0007052 mitotic spindle organization biological_process
GO:0007059 chromosome segregation biological_process
GO:2000117 negative regulation of cysteine-type endopeptidase activity biological_process
GO:0051382 kinetochore assembly biological_process
GO:0000776 kinetochore cellular_component
GO:0005634 nucleus cellular_component
GO:0043515 kinetochore binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-081104-340 Predicted to enable kinetochore binding activity. Acts upstream of or within chromosome segregation; mitotic spindle organization; and negative regulation of cysteine-type endopeptidase activity. Predicted to be located in chromosome, centromeric region. Predicted to be active in kinetochore and nucleus. Is expressed in head. Orthologous to human CENPH (centromere protein H).

Ensembl:

ensembl_id ENSDART00000183901

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072173 lncRNA upstream 41775 17087009 ~ 17126339 (+) False XLOC_035542
TCONS_00072172 lncRNA upstream 70661 17086991 ~ 17097453 (+) False XLOC_035542
TCONS_00072171 lncRNA upstream 108737 17055879 ~ 17059377 (+) True XLOC_035539
TCONS_00069700 lncRNA upstream 404483 16758464 ~ 16763631 (+) True XLOC_035536
TCONS_00069698 lncRNA upstream 419248 16744356 ~ 16748866 (+) True XLOC_035535
TCONS_00072174 lncRNA downstream 194594 17368041 ~ 17407080 (+) True XLOC_035546
TCONS_00072175 lncRNA downstream 789382 17962829 ~ 17968234 (+) True XLOC_035551
TCONS_00071922 lncRNA downstream 1237537 18410984 ~ 18412028 (+) True XLOC_035556
TCONS_00071923 lncRNA downstream 1536527 18709974 ~ 18733594 (+) True XLOC_035563
TCONS_00072176 lncRNA downstream 2054388 19227835 ~ 19232675 (+) True XLOC_035566
TCONS_00069708 mRNA upstream 11040 17143501 ~ 17157074 (+) True XLOC_035543
TCONS_00069706 mRNA upstream 81919 17078692 ~ 17086195 (+) True XLOC_035541
TCONS_00069705 mRNA upstream 92716 17069577 ~ 17075398 (+) True XLOC_035540
TCONS_00069702 mRNA upstream 123400 16990120 ~ 17044714 (+) False XLOC_035538
TCONS_00069711 mRNA downstream 11155 17184602 ~ 17193041 (+) False XLOC_035545
TCONS_00069712 mRNA downstream 11163 17184610 ~ 17193041 (+) True XLOC_035545
TCONS_00069713 mRNA downstream 355704 17529151 ~ 17535031 (+) True XLOC_035547
TCONS_00069714 mRNA downstream 601800 17775247 ~ 17784723 (+) True XLOC_035548
TCONS_00069715 mRNA downstream 665477 17838924 ~ 17916928 (+) False XLOC_035549
TCONS_00069707 other upstream 71049 17087060 ~ 17097065 (+) True XLOC_035542
TCONS_00069704 other upstream 94743 17069577 ~ 17073371 (+) False XLOC_035540
TCONS_00069701 other upstream 357861 16772174 ~ 16810253 (+) True XLOC_035537
TCONS_00069690 other upstream 479652 16676937 ~ 16688462 (+) False XLOC_035532
TCONS_00069685 other upstream 1088321 16023470 ~ 16079793 (+) False XLOC_035526
TCONS_00069740 other downstream 1496790 18670237 ~ 18670362 (+) True XLOC_035562
TCONS_00069742 other downstream 1849814 19023261 ~ 19023377 (+) True XLOC_035565
TCONS_00069748 other downstream 2330580 19504027 ~ 19509241 (+) True XLOC_035569
TCONS_00069759 other downstream 2778286 19951733 ~ 19952380 (+) False XLOC_035578
TCONS_00069760 other downstream 2778330 19951777 ~ 19952379 (+) True XLOC_035578

Expression Profile

//