RNA id: TCONS_00069715


Basic Information

Item Value
RNA id TCONS_00069715
length 2377
RNA type mRNA
GC content 0.48
exon number 22
gene id XLOC_035549
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 17838924 ~ 17917668 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATAGACCGCCTTTGTGTGCGCAGTATCCCACTGATGATGGCGCTGTAAACACTGTGACGCGGCGTTGCGCAAACCACAGATCGCTGTTGTATATGTGGACGAGCTCGAGATACGCTATTCACGTCCACAGCTTCATATGCAATCACATAAACAAAAGACACACGAGGACCGCTCGTCAGGGGTGCAATGGCAAGGAAAAGTGCAATTCCTCCTTCATACTATGGGGAGCCACACAAATTTGACCCCACATTCAGAGGACCTGTTCATAAAAGGGGCTGCACAGACGTGCTTTGCTGCGTGATCTTCGTCATCGTCATCCTCGGCTACATCGTTCTGGGAACAGTGGCATGGATGCATGGAGACCCCCGGAAAGTGGTCTACCCAACAGACAGCTATGGGCAATTCTGTGGTCAGCAGGAGACTCCTAATGCAAATAAAGCCATATTATTTTACTTCAATATTTTACAATGTGCCAATCCTTCAGTCCTCATTAACCTCCAGTGCCCTACAACTCAGCTGTGTGTATCCAAGTGCCCAGACAGATTTGCCACATACATTGACATGCAATACAGCTACAGACGCAATAAGGGCTCCTGGGAATACTACAAGCAATTCTGCAAGCCGGGCTTCAACAACCCTGATAAGCCGATTTCTCAGGTACTCCGGGATGAAGATTGTCCCTCAATGATTGTGCCAAGCAGACCATTTCTCCAGAGGTGCTTTCCTGATTTCATCACCAGAAATGGGACGTTAACTGTTGCCAACCAAACAAGCTTCAAAGATGGACATGGTAAAATCAGAAGCGTCGTCGACCTAAGAGATGCAGCCAATGGCATCACCAGCTTGTTGGATGCGAAGGAAGTGGGCACCAAGATCTTTGAGGATTACGCCAGCTCGTGGTTTTGGATTCTAATCGGTCTGGTGATCAGTATGCTGGTCAGCCTGGTCTTTATTCTGCTGCTGAGGTTTACCGCTGGCGTTCTCTTCTGGTTGGTTATCTTTGGAGTCATCGCGGCTGTGGGATATGGAATATGGCATTGTTACTGGGAGTACAGTTCACTTAAGGGAAAACCGGATTCAGATGTCACCATCTCAGACATTGGATTCCAGACTGACTTCCGGGTTTACCTGCAGTTGAGCCAAACCTGGCTTATATTCATGACCTCCTTGGCTGTCATTGAAGCCATCATCATCTTAGTGCTGATATTCCTAAGGAACAGAGTTCGCATTGCCATTGCTCTTCTGAAAGAGGGCAGCAAGGCGATTGGCTGCATCATGTCAACACTCTTCTATCCCATCATCACCTTCCTGCTGCTGGCTCTCTGTATTGCATACTGGGCTGTTACAGCTGTTTTCCTGGCATCGTCTGGTGAGGCCGTATACAAAGTAATGTCAACACTACCCGACTGCAAATACACAAACCTCACCTGTGACCCAGAGACCTTCAGCCAATCAAATGTGACTAAACTGTGTCCGGGCTCTCAATGCACATTTGCTTTCTATGGTGGGGAGAGTCTGTACCACCGCTACATCTTTGTGCTCCAGCTCTGCAATTTGCTGGTCTTCCTGTGGCTGGTGAATTTCACCATCGCTCTTGGCCAGTGCACCCTTGCTGGGGCTTTTGCCGCATATTACTGGGCCTTGAGGAAGCCGGCAGACATCCCACCATGCCCTTTGGCTTCATCATTTGGCAGGGCTTTAAGGTATCACACAGGCTCTCTGGCATTTGGAGCTTTGATTCTGTCCATTGTCCAGTTCATCCGGATTATTCTGGAGTATCTCGACCACAAACTGAAAGGTGCTCACAACGCATTCACACGCTTCCTGCTGTGCTGTCTCAAATGCTGTTTCTGGTGCCTCGAGCACTTCATCAAGTTCATGAACAGGAATGCTTACATTATGatttcaatATATGGGAAGAATTTCTGTACTTCAGCGAGAGATGCTTTCTTCCTGTTAATGAGGAATGTCATGAGAGTTGCTGTTCTGGACAAGGTGACTGATTTCCTGCTGTTTTTGGGCAAACTGTTGATCTCAGGGAGTGTGGGTGTCCTTGCATTCTTTTTCTTCACCCGCCAAATACCAGTAATCCAGGAAGAAGTGCCGTCATTAAATTACTATTGGGTCCCTCTACTGACTGTGATATTTGGATCATATATGATTGCGCATGGATTCTTTAACGTCTATGCCATGTGTGTCGATACACTGTTCCTCTGCTTCTTGCTTGATCTGGAGAAGAACGACGGTTCAGCAACCCGTCCGTATTACATGTGCAGCAGCCTGAGAGCCATTCTCAACAAGAAGAACCAGAAGAGACCCAAGGAGACCAAGAGAGGTAGAAAACAAAAGAAGGAGCAACCAAAAAGCAGACACTGA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-4 Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human SLC44A5 (solute carrier family 44 member 5).

Ensembl:

ensembl_id ENSDART00000170762

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072174 lncRNA upstream 431844 17368041 ~ 17407080 (+) True XLOC_035546
TCONS_00072173 lncRNA upstream 712585 17087009 ~ 17126339 (+) False XLOC_035542
TCONS_00072172 lncRNA upstream 741471 17086991 ~ 17097453 (+) False XLOC_035542
TCONS_00072171 lncRNA upstream 779547 17055879 ~ 17059377 (+) True XLOC_035539
TCONS_00069700 lncRNA upstream 1075293 16758464 ~ 16763631 (+) True XLOC_035536
TCONS_00072175 lncRNA downstream 45901 17962829 ~ 17968234 (+) True XLOC_035551
TCONS_00071922 lncRNA downstream 494056 18410984 ~ 18412028 (+) True XLOC_035556
TCONS_00071923 lncRNA downstream 793046 18709974 ~ 18733594 (+) True XLOC_035563
TCONS_00072176 lncRNA downstream 1310907 19227835 ~ 19232675 (+) True XLOC_035566
TCONS_00069750 lncRNA downstream 1597429 19514357 ~ 19516262 (+) False XLOC_035570
TCONS_00069714 mRNA upstream 54201 17775247 ~ 17784723 (+) True XLOC_035548
TCONS_00069713 mRNA upstream 303893 17529151 ~ 17535031 (+) True XLOC_035547
TCONS_00069711 mRNA upstream 645883 17184602 ~ 17193041 (+) False XLOC_035545
TCONS_00069712 mRNA upstream 645883 17184610 ~ 17193041 (+) True XLOC_035545
TCONS_00069709 mRNA upstream 665230 17167876 ~ 17173694 (+) False XLOC_035544
TCONS_00069719 mRNA downstream 16547 17933475 ~ 17947205 (+) True XLOC_035550
TCONS_00069720 mRNA downstream 70287 17987215 ~ 17990577 (+) False XLOC_035552
TCONS_00069721 mRNA downstream 70850 17987778 ~ 17988853 (+) True XLOC_035552
TCONS_00069722 mRNA downstream 73267 17990195 ~ 17992600 (+) True XLOC_035553
TCONS_00069723 mRNA downstream 93640 18010568 ~ 18036613 (+) False XLOC_035554
TCONS_00069707 other upstream 741859 17087060 ~ 17097065 (+) True XLOC_035542
TCONS_00069704 other upstream 765553 17069577 ~ 17073371 (+) False XLOC_035540
TCONS_00069701 other upstream 1028671 16772174 ~ 16810253 (+) True XLOC_035537
TCONS_00069690 other upstream 1150462 16676937 ~ 16688462 (+) False XLOC_035532
TCONS_00069685 other upstream 1759131 16023470 ~ 16079793 (+) False XLOC_035526
TCONS_00069740 other downstream 753309 18670237 ~ 18670362 (+) True XLOC_035562
TCONS_00069742 other downstream 1106333 19023261 ~ 19023377 (+) True XLOC_035565
TCONS_00069748 other downstream 1587099 19504027 ~ 19509241 (+) True XLOC_035569
TCONS_00069759 other downstream 2034805 19951733 ~ 19952380 (+) False XLOC_035578
TCONS_00069760 other downstream 2034849 19951777 ~ 19952379 (+) True XLOC_035578

Expression Profile

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