XLOC_035570 (si:ch73-281k2.5)


Basic Information

Item Value
gene id XLOC_035570
gene name si:ch73-281k2.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 19514294 ~ 19520341 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069749
TGTTCATCAGCAGTTTGTGAGATTTGTGATATGTACAATAACTGAAGCGTAGTCATCAGTGGAGTTGTGTGTGCGAGTTTTTTGCTGATTCCAATTGTCACTTCCTACAAATGTAGTTTCACAGGAAAGATCAAGTACACAGTCTTTTAATGGTCAACGGCACTTGTTACATGCACGCATAGGCTAATATTTGTCTACAAGTTCTTAAGCAttacctgattttttttcttttttaatatggACCATTTTCTCAATGCATCTTCAGAAAAATTCATCCTCCTTTTTATTTTCTGCTTGACAATGTCATATGaaacaaattgcGAGGTGAACATTGATGATTGTCTGAATCACCGCTGTCAGAATGGAGCCACATGCATAGATGGAGTGAACACCTACACTTGCCAGTGCCCACCTAAATGGACAgGTCAGTTTTGCACTGATGATGTGGATGAATGCAGACTGCAGCCCAACGCCTGTCAGAACGGAGGCAAATGCAGTAACACACGCAACGGCTACAACTGTGAGTGTGTGAACGGCTGGAGCGGCCTGGACTGCTCTGAAAACATTGATGACTGTGCATATACGCCCTGCTTTGCCGGCTCCACTTGCATCGACCGTGTGGCTTCTTTCTTTTGCAGCTGCCCTCCCGGCAAGACTGGTTTGCTGTGTCACCTTGATGATGCCTGCATCAGTAACCCCTGCAAGATGGGCGCTGAATGCGATACAAACCCTCTCAATGGCAAATTCTACTGTAACTGCCCTTTAGGATACAAGGGCAGGACATGCGAGGAGGATATAGACGAATGTGTTATCGGGCcaaacccatgtgagcatgggGGCTTATGTAAAAACACAGAAGGCTCGTTCACCTGTTACTGTGCTTCAGGTTACACCGGCCCACGTTGTGAGCATAAAATTAAAGATTGTGACTTCAACCCCTGCCAGAATGATGCCAGGTGCTTTGTTGAGATGGGAAATTACAGCTGCATGTGCATGGCAAGGGCTTAAGACACACTGTGATCAGGTGCATGATTTGGAAACGGATAGGTCTCATTAATAATTTGTGCATAAGATATGATGCAAACATGCACAGCCTGTAAATCTCATGCGTAATCCctaataacaaaaatacagtTATTCACAATAACTATGTACAATTATGCacaagatttatttaaattatagggGTTTATTATAAGGTCTGATTTTGCATATTATACTTGTGTAAATTGTCTTGGATTTTGAGACTTTTTCTTAAAAGGTTAAGGAAGTTCATTTTAAAGTCCTTCCTAAAATAAATCCTGCTAGAGATTAAAGTTCAAAACACTCTGATGAATATTCAGCTCCACAGATGTTAAATATCCCtttgctgatttaaaaaaaataaaataaaaacaaaggatctata
>TCONS_00069750
GTTGTGTGTGCGAGTTTTTTGCTGATTCCAATTGTCACTTCCTACAAATGTAGTTTCACAGGAAAGATCAAGTACACAGTCTTTTAATGGTCAACGGCACTTGTTACATGCACGCATAGGCTAATATTTGTCTACAAGTTCTTAAGCAttacctgattttttttcttttttaatatggACCATTTTCTCAATGCATCTTCAGAAAAATTCATCCTCCTTTTTATTTTCTGCTTGACAATGTCATATGaaacaaattgcGAGGTGAACATTGATGATTGTCTGAATCACCGCTGTCAGAATGGAGCCACATGCATAGATGGAGTGAACACCTACACTTGCCAGTGCCCACCTAAATGGACAggtaaaaaaataacttaatctTCTGtgtggttcttgaatctgattggctgatagtcaaGAGATATTCTCCAAATAATAGCACTCCTACAGCTTCTTCACcgttcacccttgtgtattactccacatACAGCATAAGCAGAGGACACTACAATTTGATAAATATTGCttctgttggacaacataatttacttttgaggcttttttttagctgagaatagttgtttagattgcaactatgcaatttatttattaggatagtgactattttaaaaaatgtaaaatttttgagCTTCGAATCCAGTGCATCAGCCTGTTTGAGCTgaccaaagaaagtgacggtTGACATTACAAGATGTCTACAGAGAGCGCATAAAAAGTCCTTAGAGGAGAACAACAGCATTTTCTCAGCgtatgtttcaaactacagctgaacaaatcgttataaatcaggtaagtgacattctaataTCTCTCTGTTTTGTAGTGCTGTTTTTGtaccacagaaactg
>TCONS_00069751
taccgtcaaactgttgtataaatgcaatatcatgtgagtagcagtgcaatatggctgtatatcggcactggtggggggcactaaggcactcggcctgcagcctcaagccaatgcacgcctcccaccagtgccaatatacagccatattgtgCTGCTACTCGTGAGGTATTTCTCATACATATGattccttttaattatttaatcaaagtGATCCACATTTATTTAAGGGTTCAGTGCAAACTTTGACACAAGCTAAAATGTTAGTGTTTTCAAATTGGAACTGATTTTCTTAAGTTATTCATACTTCATAATGTCAGCACAAACCTCTTTAAACCTTTAAAACATGCGATTGAAATAGTGACCCTATTGTCTCCAGGTCAGTTTTGCACTGATGATGTGGATGAATGCAGACTGCAGCCCAACGCCTGTCAGAACGGAGGCAAATGCAGTAACACACGCAACGGCTACAACTGTGAGTGTGTGAACGGCTGGAGCGGCCTGGACTGCTCTGAAAACATTGATGACTGTGCATATACGCCCTGCTTTGCCGGCTCCACTTGCATCGACCGTGTGGCTTCTTTCTTTTGCAGCTGCCCTCCCGGCAAGACTGGTTTGCTGTGTCACCTTGATGATGCCTGCATCAGTAACCCCTGCAAGATGGGCGCTGAATGCGATACAAACCCTCTCAATGGCAAATTCTACTGTAACTGCCCTTTAGGATACAAGGGCAGGACATGCGAGGAGGATATAGACGAATGTGTTATCGGGCcaaacccatgtgagcatgggGGCTTATGTAAAAACACAGAAGGCTCGTTCACCTGTTACTGTGCTTCAGGTTACACCGGCCCACGTTGTGAGCATAAAATTAAAGATTGTGACTTCAACCCCTGCCAGAATGATGCCAGGTGCTTTGTTGAGATGGGAAATTACAGCTGCATGTGCATGGCAAGGGCTTAAGACACACTGTGATCAGGTGCATGATTTGGAAACGGATAGGTCTCATTAATAATTTGTGCATAAGATATGATGCAAACATGCACAGCCTGTAAATCTCATGCGTAATCCctaataacaaaaatacagtTATTCACAATAACTATGTACAATTATGCacaagatttatttaaattatagg

Function

symbol description
si:ch73-281k2.5 Predicted to enable Notch binding activity.

GO:

id name namespace
GO:0005112 Notch binding molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141222-10 Predicted to enable Notch binding activity.

Ensembl:

ensembl_id ENSDARG00000104329

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069749 False 1408 mRNA 0.41 5 19514294 19520341
TCONS_00069750 False 869 lncRNA 0.36 2 19514357 19516262
TCONS_00069751 True 1138 lncRNA 0.44 3 19516603 19520119

Neighbor

gene id symbol gene type direction distance location
XLOC_035569 sec22bb coding upstream 2024 19504011 ~ 19512270 (+)
XLOC_035568 npl coding upstream 13940 19489854 ~ 19500354 (+)
XLOC_035567 mpeg1.2 coding upstream 154460 19356072 ~ 19359834 (+)
XLOC_035566 NA coding upstream 281619 19227835 ~ 19232675 (+)
XLOC_035565 CR376858.1 coding upstream 490917 19023261 ~ 19023377 (+)
XLOC_035571 notch2 coding downstream 28644 19548985 ~ 19619792 (+)
XLOC_035572 slc35a3a coding downstream 101170 19621511 ~ 19638362 (+)
XLOC_035573 NA coding downstream 143113 19663454 ~ 19715690 (+)
XLOC_035574 foxe3 coding downstream 148313 19668654 ~ 19670305 (+)
XLOC_035575 foxd2 coding downstream 154028 19674369 ~ 19676640 (+)
XLOC_035563 NA non-coding upstream 780700 18709974 ~ 18733594 (+)
XLOC_035562 BX247907.1 non-coding upstream 843932 18670237 ~ 18670362 (+)
XLOC_035556 NA non-coding upstream 1102266 18410984 ~ 18412028 (+)
XLOC_035576 NA non-coding downstream 160089 19680430 ~ 19682651 (+)
XLOC_035577 NA non-coding downstream 218662 19739003 ~ 19950333 (+)
XLOC_035578 BX901930.1 non-coding downstream 431392 19951733 ~ 19952380 (+)
XLOC_035579 BX901930.3 non-coding downstream 438144 19958485 ~ 19959118 (+)

Expression


Co-expression Network