XLOC_035575 (foxd2)


Basic Information

Item Value
gene id XLOC_035575
gene name foxd2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 19674369 ~ 19676640 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069757
CTCATTCACGCACAGAGCTGCGACTGTACACGAAAACAAATGCTCGAATAATGAAAACTGGAAAGTTGTTACCGAATGCATATTAGTGCTACTCATATGACCTAAAAGTTTGCACTTGATGTGGAACAACTACTCGCTCAATGAAAAGGAAATCCAGGTCTCTACCGAGTGTCCAGTTCGACTTGAAAGCGCTCTGAGCTCTGGATAGTTTGTGTTATGCGAGCACGGTCTGATCCTTTTCGAGTGTTTTTCTTTCTTAATGTGCATTTTCTATGCGGCTCCAGGACGTGAAGAAAACACTGGCTTCTGGAGGACGGGAGTTCTGTTGTCACAGAACAAATAAGTGACTGAGAGGACTCACACAGCTACTCGAGACTGGACACGGAACGTGAGAGAGGAAGACAAAAAGACTCTCTAAGGATGACTCTGGGAACGGACATGTCGGACAGTTCTGCTCTGTCTGACGACGTGGACATCGATGTCGTTGGCGGGGATATTGTGAAAGAGGGTAAATATCTTCACCATCATCTTAGTTTTCACTTGGACAATGACTCCGATGACAATCTATCCCAGAACGCGGGGGAGGGCGCAATCTCTCCGGGCCAAAGCAGCTTGGACTGTCCGGCTGACAGAGTAGGGCAACGGGATGACAGCCGAACTGGTGCGTTGACAGGGGATAAACCAGGAAAAAATGCATTGGTAAAACCACCTTATTCTTACATAGCCCTTATAACGATGGCTATCTTGCAGAGTCCGAAGAAACGTTTAACTCTCAGCGAGATCTGCGAATTCATCAGCAACAGGTTTCCCTATTACCGGGAAAAATTTCCCGCTTGGCAAAACTCCATCCGTCACAACCTATCTCTAAATGACTGCTTCGTTAAAATACCCCGTGAACCCGGTAACCCGGGCAAAGGCAATTACTGGACCCTCGACCCAGAGTCCGCCGACATGTTTGACAATGGGAGTTTTCTGCGCAGAAGGAAGCGCTTCAAAAGACACCAGACCAATGAGATTCTTAGGGAAGCGGGGGGATTTCTACCTGGCTTTGGCTACGGACCGTACGGTTACAATTACGGCCTACAGCTGCAAAATTTCCATGCGCATCACCCCTATCATCCACACCATCCGGGAAGCGCGTTCCCTTTCCAAAACACACATTGTGCTCTACCAACACCTTCGTCGATTTTCTCCACGCCACACAGCTTGCCTTCATTTTTAGGTACCGAGCTAAGAAAGCCTTTCTATCCTCAACTCAGCCCGACTCTTCCTGGTCTGGCTCCGCTCAAAACGGACACTAATGGTCCAAGTCGGCCTTCCTTCTCTATAGACAATATAATTGGTGCGGCTAGCTCACCGGCTTCACCATACACCACACAACCGGCTGGACAGGCTCAAATCTTAGCCATGCTGACTCCCACTCTTGCTTCGGCCACGAACCACTTAAGTATAACGCAGGAAACGATGCTTCAGCCTGGCACACAGACTTTCTCGAGCAAAACGTCAAGCCTTAACAATTGCCATTTCTAGAGTGGCAACAAATAGAAAGTGCAGCAGTCCGTTTAATATGGTTGTTTCGTCATTTGCTAAGGTAGGATTTACACTTTTGCAAGATTAAAATATCGCCCGTTTCATGTTTCCGAATTCTTAAATGAAAAGGCTAATTAAGTATATTTATGAACTGTAAATATGTAAGATTTTGAAGAGAGAAACAGGCTGAAGTGAGGAAAGTAAGTCCATGTAAATAGTAAGCTAAGATTTCACCTTTGGACGGCCAGTGGACCTTTGCCGTTTTGTCCAAAAAGTTAAATAGTTTATACTCACTGACATGGAATTTCCTCTTTTGGTTGACCTTAATGaagattgttttaattattttattgttttgtatattttgtgAGTTTGTGAAAAGCACTGTCAGTACCGAGACTTAAAACTCAGGATTTACTTGTTTTGAAAGCACATTGCCAGAGACAATAGGGGCTGTAAATAGATTACATAGGTTAACGTCCCACTTCCCCTAGTTCACTCAACAGAAGTGTTCtggtgaattttattttatttctgttgatAGATGATTATGTGGTTCTTGGTGTAAATCGCATTACCTCTTTCTGTCTGACTCTTGTGCATACGTTATTACATATTTCATTATTCCATTGAAAAGAATTATCTGTGAAAAAGAATGTTGTTATATGTAAAGAGACGAAACAATGTCCATAGGTCATTTTTTGTTGTAATGGCAAGACAataaatgtttgtgaattttcaA

Function

symbol description
foxd2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure morphogenesis; cell differentiation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including anterior neural rod; diencephalon; paraxial mesoderm; pharyngeal arch; and sclerotome. Orthologous to human FOXD2 (forkhead box D2).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980605-6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure morphogenesis; cell differentiation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including anterior neural rod; diencephalon; paraxial mesoderm; pharyngeal arch; and sclerotome. Orthologous to human FOXD2 (forkhead box D2).

Ensembl:

ensembl_id ENSDARG00000058133

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069757 True 2272 mRNA 0.44 1 19674369 19676640

Neighbor

gene id symbol gene type direction distance location
XLOC_035574 foxe3 coding upstream 4064 19668654 ~ 19670305 (+)
XLOC_035572 slc35a3a coding upstream 36007 19621511 ~ 19638362 (+)
XLOC_035571 notch2 coding upstream 54577 19548985 ~ 19619792 (+)
XLOC_035570 si:ch73-281k2.5 coding upstream 154028 19514294 ~ 19520341 (+)
XLOC_035569 sec22bb coding upstream 162099 19504011 ~ 19512270 (+)
XLOC_035576 NA coding downstream 3790 19680430 ~ 19682651 (+)
XLOC_035577 NA coding downstream 62363 19739003 ~ 19950333 (+)
XLOC_035578 BX901930.1 coding downstream 275093 19951733 ~ 19952380 (+)
XLOC_035579 BX901930.3 coding downstream 281845 19958485 ~ 19959118 (+)
XLOC_035580 BX901930.2 coding downstream 288583 19965223 ~ 19965877 (+)
XLOC_035566 NA non-coding upstream 441694 19227835 ~ 19232675 (+)
XLOC_035565 CR376858.1 non-coding upstream 650992 19023261 ~ 19023377 (+)
XLOC_035563 NA non-coding upstream 940775 18709974 ~ 18733594 (+)
XLOC_035562 BX247907.1 non-coding upstream 1004007 18670237 ~ 18670362 (+)
XLOC_035556 NA non-coding upstream 1262341 18410984 ~ 18412028 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_02998602_02999708 FOXD2, FOXD1 coding CI01000010 null 2998475 ~ 3000349 (-)