XLOC_035548 (si:ch211-150o23.3)


Basic Information

Item Value
gene id XLOC_035548
gene name si:ch211-150o23.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 17775247 ~ 17784723 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069714
AAATCATTCACGAGTCGGACGTCGCCAGTCTGGATTATGACGTTTGTGGGATTACCTTACGCACAAACAGCACCAACTCACGAAACAGTTCTTGATTTTGATTTACTTGATTATTCCTTGTCGATACATCAATAATTAATTAACCTCGCTGGACGAATAACTTAACTCTTTTTTTTCCACCTCAGGCCAGCGTTAGCATGTTAGCCGTGCAGTCCCACAGGTAGCTTCTGTGCCTAAACCGCGATGTGCTATTTGCTAAATAAATGGACGCTTTTGTTTATATGCGTACgttatgaaaaataatgaaaagatTTATAATAAGGTGGTGAACAGGAGCAGTTTAGGATTTCAGGGGTGCTAGTTAGCCAGCTAGCTGTGCATCAACTTACTCCTCACTGAAAACGTCAGACTTTGTGTTTCTGACATTGACAGAACTTTAGTTATTCAAATAAGTTAGTAACTTAAATGAGACTAAAACCTCACCAATTGCGTTACATGGAAAATCTACAATGTCGAGGATTCTTCTGGGCCTGGTAGTGCTTGGATTCAATGTTGCTGTTCAAGATGTTCATGCCTTCGACATCCTGAACACCAGGCTTGTAAATGACAAAGCGGGTGAGCGATGCTCCGGGAGACTGGAGGTGCGTCACGGGCATCACTGGGGCACTGTGTGCGAGCGTGGCTGGGATGTGTGGGACGCTGCAGTGGTTTGCAGAGAGCTGGACTGCGGCTTCGTGCTGGACATTCCAAATGGCATTCGTTACGGACGGGCCGGTGGAGAGGTGCTGTGGAGGGATGTGAAATGCTCAGGTGATGAGTTTGCCCTGGATCTGTGTGAACGCAGCCTGAATGAACACGTCTGTACACACAGTCAAGATGCTGGAGTGGAGTGCACAGGAAAACTTCCAGCACCCACCTTGTCAATTCATTCACGCTTCAATGCCTATTCGTCCGGTGAGGCCGTTCAGTTTAAATGCACCGCCCCGTACTGGCAGTCCGTCATCGACTTCCATCTGTACAAAAGTGGTGTGGACACTCCGCTAGTGACCCAAAGAGCAGACCCCAAACAGATGATGGTAGATCTGACCCTGTCGGACCTGGAAATGTTCCACCAGGGCAGCTACAGCTGTCTGTACAGAATACACAGCAAACTGAGAAACGCTCCTTCAGGAGATTCTCCACACAGCAACTACATCAACATCACAGTGGTGGATATTCACACTCCCCAGATCTGGTACAACACGTCTCCTGAGGCGCGGCCAGGGTGGGTCATGCGGGGCCACAGTTTTAATGTCACCTGTTCCACCCAGCCTCAGTATCCTGGAGGCTCCTTTCAGCTGCGCCTTATTAGGCCCAACGGGACCATCCGGCACTCTTTGCCAGCCCTTGCTCCCTCCGTTACCTTCACCTTCTCCAATGCCCAGTCCAATAACGAGGGCTACTACTGCTGTCTCTACAAGGTGCAGACTGGAGAGCGCACATTTATCTCCAGGGAGAGTCAGCCTTTACCCATCTCTATTCGAGAGGTGGACCCGGTGATGAGCCCGGTGGTCATCAGTTTGCTGGTATCTGGTCTGACGTTTGTGGTGGCGACATGTGCCATTCTGATAGCTGCCAAAGTCTACTGTAAAAGAGTGAGGAAACCCACTGAACTGGAGCGAGAGAGCAGGACCTGTGTTGACAACACGTATATTGCCTTGACAGTCAAGTAATGGGGGTTCAGAATGAAGATGTAAGAAGCTTCCCTAAACCGGTCCAGTTGTGGTTGCTGTTTCAGCCTGTTCAAACCCAAGGGGGGATCAGAAACCGCACAAACCACAATTTCTTCCTTTCTGCCATTGTCTGTCAGATGCAGAGAAAAGCATTTCCGTTGTCATTCTTTTTTCTGACTTTCAATGTTAATGGAGATGGGCGAGATGTTTCTTTGTAAGTAGATGCTGAGATCACTAGACTTGAAGAGGTGACATTACAACACAAGCTGTTGCACTATCATGGATTTAAAAAGGGCTTTTTAGTTTTTAGAGGTACCATGTCTGACCCACCCTGAGGTCTTCCCATAATGTTGCAGGTAAAGActgtaaaactgtgaaatgttttgggtgtttttttattgtttattttttttcaaggggctttattgtttaaaatgatatatttattgtgtttttttctactaCAGTTGTTTTTTGAAGATCATATGTGTATAATGTTTGGTTTAATCACAGATGGGAACTGGGTCAGACAGCCCTAAGAACAACCTCTACAGCTTTAGGTCACTACATGAATGTGAAAgtgtcatttcattgtatatGTGGTCAAGTTTGTTCATAAGTTCTCATTGGAACCATGGTAAATGCTTGAGCTGGTATAAGAACAAATCCTCTGACACATGTAGTGTTAGTACAACACAAGATATAATCCCTGTATTTACAAATATGACGGAACAATAATAGTTTTAGTGTGGACTAGCAGTATACAGTCAACATTTAAAGCAGCAGCATTAACGTCTTGTGAATCCAAGAAAATAGTAAACACTACAGAATATACACTCCGTTTATAACTAGGAAAAGAAAACTGTTCAGGTAAATTATTTGAAACGAACaacttgtttaaaacatttatataggttttttattaataaataagaaaatgttaaatgctcaattaataatgaaaatatggTAAAGACACTGCTCTCACCTTATGTTACATCCATGTCTTGTAGTGTGAACTAATGATTGTTTTTTTACGTTGTAGTTTTATCGGTACatacaataaaatttgt

Function

symbol description
si:ch211-150o23.3 Predicted to enable scavenger receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-479 Predicted to enable scavenger receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000078502

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069714 True 2785 mRNA 0.44 8 17775247 17784723

Neighbor

gene id symbol gene type direction distance location
XLOC_035547 si:ch73-70k4.1 coding upstream 240216 17529151 ~ 17535031 (+)
XLOC_035546 NA coding upstream 368167 17368041 ~ 17407080 (+)
XLOC_035545 dimt1l coding upstream 582206 17184602 ~ 17193041 (+)
XLOC_035544 cenph coding upstream 601553 17167876 ~ 17173694 (+)
XLOC_035543 mier3b coding upstream 618173 17143501 ~ 17157074 (+)
XLOC_035549 slc44a5b coding downstream 54201 17838924 ~ 17917668 (+)
XLOC_035550 erich3 coding downstream 148752 17933475 ~ 17947205 (+)
XLOC_035551 NA coding downstream 178106 17962829 ~ 17968234 (+)
XLOC_035552 lrriq3 coding downstream 202492 17987215 ~ 17990577 (+)
XLOC_035553 si:dkey-267j14.7 coding downstream 205472 17990195 ~ 17992600 (+)
XLOC_035542 NA non-coding upstream 648908 17086991 ~ 17126339 (+)
XLOC_035539 NA non-coding upstream 715870 17055879 ~ 17059377 (+)
XLOC_035537 CR925863.1 non-coding upstream 964994 16772174 ~ 16810253 (+)
XLOC_035533 NA non-coding upstream 1053871 16719107 ~ 16721376 (+)
XLOC_035556 NA non-coding downstream 626261 18410984 ~ 18412028 (+)
XLOC_035562 BX247907.1 non-coding downstream 885514 18670237 ~ 18670362 (+)
XLOC_035563 NA non-coding downstream 925251 18709974 ~ 18733594 (+)
XLOC_035565 CR376858.1 non-coding downstream 1238538 19023261 ~ 19023377 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_04028461_04031710 NA coding CI01000010 null 4028297 ~ 4031710 (-)