XLOC_035545 (dimt1l)


Basic Information

Item Value
gene id XLOC_035545
gene name dimt1l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 17184602 ~ 17193041 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069711
GAAAGGAAACAGAATAAACCCTGTAGCTTCTACACGTGTTTGTGGTGCTGTAAACGTATAAGTATTTTTGTGATTTACATCTTACTTTTCACTGTCGCTGATATTATTTGTCAAAATGCCGAAGGTTAAAGCCGAGAAGAAGTCTCGAACACACCAGGAGGTGAAGAGTCAAGGAATTATGTTTAATACTGGTATCGGTCAGCATATTTTGAAAAACCCTTTGGTTGTCAACGGCATCATAGAGAAGgCAGCGCTGCGACCAACAGACGTTGTTCTGGAAGTTGGTCCTGGAACAGGTAACATGACTGTCAAACTTCTGGAGAAAGCCAAGAAAGTGGTTGCGTGTGAGTTGGACACCAGGCTTGTTGCTGAGCTTCAAAAAAGAGTCCAGTGCACTCCAATGCAGAACAAACTTCAGATCCTCATCGGGGACGTCCTCAAAACAGAACTCCCCTTTTTTGATGTCTGCGTGGCTAATCTGCCTtatcagATTTCATCGCCTTTTGTGTTCAAGTTGTTACTCCACAGGCCATTTTTTAGatgtgCTGTGCTGATGTTTCAGAGGGAGTTTGCAATGCGCTTGGTGGCTAAACCAGGAGACAAGCTGTACTGCAGACTGTCCATCAACACACAGTTGCTGGCCCGTGTGGACCATCTCATGAAGgtggGAAAGAACAATTTCAGACCACCTCCAAAAGTTGAGTCCAGTGTGGTGAGGATAGAGCCCAAAAATCCTCCTCCACCTGTCAACTTTCAGGAATGGGATGGTCTGGTCAGAATTGCATTTGTTCGAAAGAACAAAATGCTCAGTGCTGCCTTCAAATCTGCTGCAGTCGAGAAACTTTTAGAGAAGAACTACAAGATTCACTGCTCCGTCCACAATATAGAAATCCCTGAGGATTTCAACATTGCTCCGAAAATTGAAAGCATCCTTCAAGAGTCCAAGTTCAGTGATAAGAGGGCACGTTCCATGGATATAGATGATTTCATGGTGCTTCTTCATGCGTTCAACTCTGCTGGGATACACTTCTCTTAAAATTTAAGGAACGGGGAACGGCTACTAGCTTTACAGAAGTGATGTCACGGTCTTCTCGTATTCTGGTTGATGCTTTCGTACATGCGAAGAAATGATTGACATTTCTTTTCAATGGACAAGCAATGGAACACTTAATCACTCAGGCTGGGATGTTTTGTGCCTTTCCTGTATTGGGGAAAGAATTATGGACTTCTTTTGAGAGGTAATACTTTAGATGTACGAGTGTGTGGTAAGAGCTTTTACTCTATAAGATTGTCTTAACGGATAAGACAAGTTTTTCATTACCGTCAGTCTCAGCACTGAACATCATCGTGTGTTTACTTCTCATTACTGAACTGTCAAGGTGAGAAATGATTGCTGTTAACACTTTACGGTAAGGTGCAGTTTTaattgcattagttaatgtaaagAATTGCCATGAACAAATGGATCATTTGAttgatcaaaaataataatattaactactatttactcacccttaagtctTTCTAAAATGTTTGAGTTCCTgcctctgttgaacataaaatagatattttgaagaaagctgaaaaccttatATAGTAATTGTTTTCTCTGCTATAGAAGTCaacagttacaggttttcagctttcttcaaaatatcttcattgtgtttaacagaagaaagtaactCATAACTAAAGGTTTGAAACTGGTGAAgtatgattaaatgatgacaattttctttTGTGGGTGTACTATCTCTTTAAATACAAACAATGAGCCGAACATTTTGCAGCATTTTTGCCTGGGTGGATATAAATGGATTGATAGCAAAGCTTCAGTTCATTTATAGAACTTGGAGTGTCAAACATGTATTAGTGAATCTAGAAAAAATAACATACTTTGAATATTAAATGTGTAAgtatttaaaacatacattttatttgcattttcgtACAGTTATTGAAACTGTACtttgtatactgtaaatatgATTGCAAACTATTGACCTATTCTCTAATTTGTTTAAGGCATGTTTCTTTAAAAGGGTTTAGTTGTACAAGGTCAATAAATCttaaagtaaatgttttgttaactTATTATTTAGAGTGTAAAAAATACAATCAAGAACATGTTCTCCAAACTTCTGAATACAAGTCTTTTGGCttttaaagaaagaagaaaacTGCTTTGTTCATTTGTGTACGACTTGTGTCTAGTGCTTCTAATTTGATTCACTTTGAATTGTTTTCATGCTCCGAAAGTAAAACAACCTTTTTTTGGAA
>TCONS_00069712
ACAGAATAAACCCTGTAGCTTCTACACGTGTTTGTGGTGCTGTAAACGTATAAGTATTTTTGTGATTTACATCTTACTTTTCACTGTCGCTGATATTATTTGTCAAAATGCCGAAGGTTAAAGCCGAGAAGAAGTCTCGAACACACCAGGAGGTGAAGAGTCAAGGAATTATGTTTAATACTGGTATCGGTCAGCATATTTTGAAAAACCCTTTGGTTGTCAACGGCATCATAGAGAAGgCAGCGCTGCGACCAACAGACGTTGTTCTGGAAGTTGGTCCTGGAACAGGTAACATGACTGTCAAACTTCTGGAGAAAGCCAAGAAAGTGGTTGCGTGTGAGTTGGACACCAGGCTTGTTGCTGAGCTTCAAAAAAGAGTCCAGTGCACTCCAATGCAGAACAAACTTCAGATCCTCATCGGGGACGTCCTCAAAACAGAACTCCCCTTTTTTGATGTCTGCGTGGCTAATCTGCCTtatcagATTTCATCGCCTTTTGTGTTCAAGTTGTTACTCCACAGGCCATTTTTTAGatgtgCTGTGCTGATGTTTCAGAGGGAGTTTGCAATGCGCTTGGTGGCTAAACCAGGAGACAAGCTGTACTGCAGACTGTCCATCAACACACAGTTGCTGGCCCGTGTGGACCATCTCATGAAGgtggGAAAGAACAATTTCAGACCACCTCCAAAAGTTGAGTCCAGTGTGGTGAGGATAGAGCCCAAAAATCCTCCTCCACCTGTCAACTTTCAGGCATGGGATGGTCTGGTCAGAATTGCATTTGTTCGAAAGAACAAAATGCTCAGTGCTGCCTTCAAATCTGCTGCAGTCGAGAAACTTTTAGAGAAGAACTACAAGATTCACTGCTCCGTCCACAATATAGAAATCCCTGAGGATTTCAACATTGCTCCGAAAATTGAAAGCATCCTTCAAGAGTCCAAGTTCAGTGATAAGAGGGCACGTTCCATGGATATAGATGATTTCATGGTGCTTCTTCATGCGTTCAACTCTGCTGGGATACACTTCTCTTAAAATTTAAGGAACGGGGAACGGCTACTAGCTTTACAGAAGTGATGTCACGGTCTTCTCGTATTCTGGTTGATGCTTTCGTACATGCGAAGAAATGATTGACATTTCTTTTCAATGGACAAGCAATGGAACACTTAATCACTCAGGCTGGGATGTTTTGTGCCTTTCCTGTATTGGGGAAAGAATTATGGACTTCTTTTGAGAGGTAATACTTTAGATGTACGAGTGTGTGGTAAGAGCTTTTACTCTATAAGATTGTCTTAACGGATAAGACAAGTTTTTCATTACCGTCAGTCTCAGCACTGAACATCATCGTGTGTTTACTTCTCATTACTGAACTGTCAAGGTGAGAAATGATTGCTGTTAACACTTTACGGTAAGGTGCAGTTTTaattgcattagttaatgtaaagAATTGCCATGAACAAATGGATCATTTGAttgatcaaaaataataatattaactactatttactcacccttaagtctTTCTAAAATGTTTGAGTTCCTgcctctgttgaacataaaatagatattttgaagaaagctgaaaaccttatATAGTAATTGTTTTCTCTGCTATAGAAGTCaacagttacaggttttcagctttcttcaaaatatcttcattgtgtttaacagaagaaagtaactCATAACTAAAGGTTTGAAACTGGTGAAgtatgattaaatgatgacaattttctttTGTGGGTGTACTATCTCTTTAAATACAAACAATGAGCCGAACATTTTGCAGCATTTTTGCCTGGGTGGATATAAATGGATTGATAGCAAAGCTTCAGTTCATTTATAGAACTTGGAGTGTCAAACATGTATTAGTGAATCTAGAAAAAATAACATACTTTGAATATTAAATGTGTAAgtatttaaaacatacattttatttgcattttcgtACAGTTATTGAAACTGTACtttgtatactgtaaatatgATTGCAAACTATTGACCTATTCTCTAATTTGTTTAAGGCATGTTTCTTTAAAAGGGTTTAGTTGTACAAGGTCAATAAATCttaaagtaaatgttttgttaactTATTATTTAGAGTGTAAAAAATACAATCAAGAACATGTTCTCCAAACTTCTGAATACAAGTCTTTTGGCttttaaagaaagaagaaaacTGCTTTGTTCATTTGTGTACGACTTGTGTCTAGTGCTTCTAATTTGATTCACTTTGAATTGTTTTCATGCTCCGAAAGTAAAACAACCTTTTTTTGGAA

Function

symbol description
dimt1l Predicted to enable rRNA (adenine-N6,N6-)-dimethyltransferase activity. Predicted to be involved in rRNA methylation. Predicted to act upstream of or within methylation and rRNA modification. Predicted to be active in mitochondrial matrix. Orthologous to human DIMT1 (DIM1 rRNA methyltransferase and ribosome maturation factor).

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0000154 rRNA modification biological_process
GO:0031167 rRNA methylation biological_process
GO:0032259 methylation biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity molecular_function
GO:0008649 rRNA methyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-75 Predicted to enable rRNA (adenine-N6,N6-)-dimethyltransferase activity. Predicted to be involved in rRNA methylation. Predicted to act upstream of or within methylation and rRNA modification. Predicted to be active in mitochondrial matrix. Orthologous to human DIMT1 (DIM1 rRNA methyltransferase and ribosome maturation factor).

Ensembl:

ensembl_id ENSDARG00000005057

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069711 False 2283 mRNA 0.38 12 17184602 17193041
TCONS_00069712 True 2275 mRNA 0.38 12 17184610 17193041

Neighbor

gene id symbol gene type direction distance location
XLOC_035544 cenph coding upstream 10908 17167876 ~ 17173694 (+)
XLOC_035543 mier3b coding upstream 27528 17143501 ~ 17157074 (+)
XLOC_035542 NA coding upstream 58263 17086991 ~ 17126339 (+)
XLOC_035541 plk2b coding upstream 98407 17078692 ~ 17086195 (+)
XLOC_035540 si:dkey-190g11.3 coding upstream 109204 17069577 ~ 17075398 (+)
XLOC_035546 NA coding downstream 175000 17368041 ~ 17407080 (+)
XLOC_035547 si:ch73-70k4.1 coding downstream 336110 17529151 ~ 17535031 (+)
XLOC_035548 si:ch211-150o23.3 coding downstream 582206 17775247 ~ 17784723 (+)
XLOC_035549 slc44a5b coding downstream 645883 17838924 ~ 17917668 (+)
XLOC_035550 erich3 coding downstream 740434 17933475 ~ 17947205 (+)
XLOC_035539 NA non-coding upstream 125225 17055879 ~ 17059377 (+)
XLOC_035537 CR925863.1 non-coding upstream 374349 16772174 ~ 16810253 (+)
XLOC_035533 NA non-coding upstream 463226 16719107 ~ 16721376 (+)
XLOC_035531 NA non-coding upstream 571131 16609678 ~ 16613471 (+)
XLOC_035551 NA non-coding downstream 769788 17962829 ~ 17968234 (+)
XLOC_035556 NA non-coding downstream 1217943 18410984 ~ 18412028 (+)
XLOC_035562 BX247907.1 non-coding downstream 1477196 18670237 ~ 18670362 (+)
XLOC_035563 NA non-coding downstream 1516933 18709974 ~ 18733594 (+)

Expression


Co-expression Network