XLOC_035540 (si:dkey-190g11.3)


Basic Information

Item Value
gene id XLOC_035540
gene name si:dkey-190g11.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 17069577 ~ 17075398 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069704
GCATGTGTTATTTATGTCACGTATTCCTCgttctaaaaacaaacaatagacttTTGTTGACACGCGAAAGTGCTCCATCATGGAAGATTCAGTGGAGGTCATCCTTCAGCACAAGAGCTGTGAGCTCTCTCGTCACACAGAGGAAAAGCCACTGGTCACAGCAGCATCTGGAGCGTTTCTTGCGGGAGTTTATGGGCTCTGGACATTATTTGCACTCCCTGGCTTCCGGAAAGTACCAATATGCCTCAAGGTGCCTTATTTGCCCTCCAGTAGAACACAGACCCAGAATGTAATGAAGCTCCTGCGTGGGAGAGCAGGGTGTCTGGCGGATCTGGGGTCTGGTGATGGGCGACTGAACTTTTTCAGACGCTTCTGATGGCTTTCTGGAGACGACTGCTTTCTCACCGCAATGCATGGTATTTGCTGCCACTGCAAAGGGTTTCCACTGCACTGGCTTTGAAATCAATTCTATCCTGACTGGATATGCCAGAGTCAAATCAAATTGGAAGGGAATACCATCCAGCACTG
>TCONS_00069705
GCATGTGTTATTTATGTCACGTATTCCTCgttctaaaaacaaacaatagacttTTGTTGACACGCGAAAGTGCTCCATCATGGAAGATTCAGTGGAGGTCATCCTTCAGCACAAGAGCTGTGAGCTCTCTCGTCACACAGAGGAAAAGCCACTGGTCACAGCAGCATCTGGAGCGTTTCTTGCGGGAGTTTATGGGCTCTGGACATTATTTGCACTCCCTGGCTTCCGGAAAGTACCAATATGCCTCAAGGTGCCTTATTTGCCCTCCAGTAGAACACAGACCCAGAATGTAATGAAGCTCCTGCGTGGGAGAGCAGGGTGTCTGGCGGATCTGGGGTCTGGTGATGGGCGACTGGTATTTGCTGCCACTGCAAAGGGTTTCCACTGCACTGGCTTTGAAATCAATTCTATCCTGACTGGATATGCCAGAGTCAAATCAAATTGGAAGGGAATACCATCCAGCACTGCGAGTTTTGTAAACCAGGACTTTTGGAAGACCGATTTGTCCAAATATAACAATGTGACTGTTTTCTTGGCACCCGGAGTGATGGAGGTGTTGGGTAGAAAGTTGGAGAAGGAGTTACCAGATGAGGCTCGAGTCATCGCCTGTCGCTTCCCCTTTCCAGACTGGACTCCGACAGCCACTGAGGGTGAGGGGCTGGACCAGACATGGGCATATGATATGAATGTCATTCGCAAACTTTCAACACAAGCTGCCATGAAATAAGGAGAAAAGccttttgtccaaaaaaaaaaaaacctgcttcATGATTTAGCACTGCCTGATAGGTACCTGTCACTTTAatgtaaaacataataatttcctatttttgtattttttagagtATGCTTATATGCTATCATAGATTTTGTAGAAAAGTAGCTTTTCTGTGTTGTGTATTTCTGAACTAAACTGTGAAATAAAGAGCCAGTGT

Function

symbol description
si:dkey-190g11.3 Predicted to enable protein-lysine N-methyltransferase activity. Predicted to be involved in peptidyl-lysine trimethylation; positive regulation of proton-transporting ATP synthase activity, rotational mechanism; and regulation of mitochondrial ATP synthesis coupled proton transport. Predicted to act upstream of or within methylation. Predicted to be located in mitochondrial membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion.

GO:

id name namespace
GO:1905273 positive regulation of proton-transporting ATP synthase activity, rotational mechanism biological_process
GO:0018023 peptidyl-lysine trimethylation biological_process
GO:1905706 regulation of mitochondrial ATP synthesis coupled proton transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016279 protein-lysine N-methyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-341 Predicted to enable protein-lysine N-methyltransferase activity. Predicted to be involved in peptidyl-lysine trimethylation; positive regulation of proton-transporting ATP synthase activity, rotational mechanism; and regulation of mitochondrial ATP synthesis coupled proton transport. Predicted to act upstream of or within methylation. Predicted to be located in mitochondrial membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion.

Ensembl:

ensembl_id ENSDARG00000025914

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069704 False 528 nonsense_mediated_decay 0.48 5 17069577 17073371
TCONS_00069705 True 935 mRNA 0.44 6 17069577 17075398

Neighbor

gene id symbol gene type direction distance location
XLOC_035539 NA coding upstream 10200 17055879 ~ 17059377 (+)
XLOC_035538 pde4d coding upstream 24863 16990120 ~ 17044714 (+)
XLOC_035537 CR925863.1 coding upstream 259324 16772174 ~ 16810253 (+)
XLOC_035536 elovl7a coding upstream 299779 16758304 ~ 16769798 (+)
XLOC_035535 ercc8 coding upstream 312292 16738282 ~ 16757285 (+)
XLOC_035541 plk2b coding downstream 3294 17078692 ~ 17086195 (+)
XLOC_035542 NA coding downstream 11593 17086991 ~ 17126339 (+)
XLOC_035543 mier3b coding downstream 68103 17143501 ~ 17157074 (+)
XLOC_035544 cenph coding downstream 92478 17167876 ~ 17173694 (+)
XLOC_035545 dimt1l coding downstream 109204 17184602 ~ 17193041 (+)
XLOC_035533 NA non-coding upstream 348201 16719107 ~ 16721376 (+)
XLOC_035531 NA non-coding upstream 456106 16609678 ~ 16613471 (+)
XLOC_035529 NA non-coding upstream 487535 16563953 ~ 16582042 (+)
XLOC_035546 NA non-coding downstream 292643 17368041 ~ 17407080 (+)
XLOC_035551 NA non-coding downstream 887431 17962829 ~ 17968234 (+)
XLOC_035556 NA non-coding downstream 1335586 18410984 ~ 18412028 (+)
XLOC_035562 BX247907.1 non-coding downstream 1594839 18670237 ~ 18670362 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location