XLOC_035539


Basic Information

Item Value
gene id XLOC_035539
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 17055879 ~ 17059377 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072171
CGTTGATGTTGTCCTTCGCACTGGTCTCGAAAAACTCAAATCCTTTTGGGAGAGAAAAAGTTAAGCGAGGATCACCTGTGCATTGTCCCACGAGTATGTCTTAATCTGGGTCGCCCTGACACAAGACGAGACAAAAGCAAGCAGACACGCTTGTCGTCAGGACAAATGCCACTGCCTGAGCTGCCAGTAGCACAAGATGTGCCAGACTCAAAACTCTGTCCGCTCTATTGTATGAACATGTCATCATGTCTCACTGAATCAATGGGAACGTCATGTCAACACTTCCTCTCTGTTCCCGTCCCTCATCTCTTCATGTTCTCTAATCCACACATCTAATGCCACTTCATTACTGCACTAGATTTTCAGCCGTTTCTACTCAAGTGTTACAATTTCAAAAGCTCTCactgtattgtatttatttttcacaccATAGTTTGTCTTGAATCACAAAAAGTTTCACCAATTTCACTAGACTAAGATCAAATGAGAAGTGAATAGTTCAGTTGCACATTATTATTGTATGAAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072171 True 527 lncRNA 0.42 2 17055879 17059377

Neighbor

gene id symbol gene type direction distance location
XLOC_035538 pde4d coding upstream 11165 16990120 ~ 17044714 (+)
XLOC_035537 CR925863.1 coding upstream 245626 16772174 ~ 16810253 (+)
XLOC_035536 elovl7a coding upstream 286081 16758304 ~ 16769798 (+)
XLOC_035535 ercc8 coding upstream 298594 16738282 ~ 16757285 (+)
XLOC_035534 smim15 coding upstream 325511 16726386 ~ 16730368 (+)
XLOC_035540 si:dkey-190g11.3 coding downstream 10200 17069577 ~ 17075398 (+)
XLOC_035541 plk2b coding downstream 19315 17078692 ~ 17086195 (+)
XLOC_035542 NA coding downstream 27614 17086991 ~ 17126339 (+)
XLOC_035543 mier3b coding downstream 84124 17143501 ~ 17157074 (+)
XLOC_035544 cenph coding downstream 108499 17167876 ~ 17173694 (+)
XLOC_035533 NA non-coding upstream 334503 16719107 ~ 16721376 (+)
XLOC_035531 NA non-coding upstream 442408 16609678 ~ 16613471 (+)
XLOC_035529 NA non-coding upstream 473837 16563953 ~ 16582042 (+)
XLOC_035546 NA non-coding downstream 308664 17368041 ~ 17407080 (+)
XLOC_035551 NA non-coding downstream 903452 17962829 ~ 17968234 (+)
XLOC_035556 NA non-coding downstream 1351607 18410984 ~ 18412028 (+)
XLOC_035562 BX247907.1 non-coding downstream 1610860 18670237 ~ 18670362 (+)
XLOC_035530 NA non-coding upstream 478070 16570336 ~ 16577809 (+)

Expression


Co-expression Network