XLOC_035534 (smim15)


Basic Information

Item Value
gene id XLOC_035534
gene name smim15
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 16726386 ~ 16730368 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069694
ATATTGCAGTGTGCAAACACAAATTAAAAGTTTCACTTCCTCTTGTACTGTTTCCGGCGACAGGTTTCTAGTACTAAAACTGCTCGTCAAATATTTAACGGTTTTTCTGGGTCTTCTGCTGAACTCTGAGTCCAGATAGGATGATTGACATAAAGGCATGGGCAGAATATGTGGTGGAGTGGGCAGCTAAAGACCCCTACGGCTTTCTCACCACAGTCATCCTAGCTTTAACCCCTCTGTTTATCGCCAGTGCCCTTTTGTCATGGAAGCTCGCCAAGATGATCGAAGCCAAGGACCGCGAGcagaaaaagaagcaaaaaagACAGGAGAACATCGCCAAAGCCAAGAGAGCCAAGAAGGACTGAGCGTGAGATGGAGAAGGGTCAATATCATCGTCCAGTTCCCTGATATATATGGCTCGTTTCTTAACCCAGGACACGTATTATGGGACCTGGAGCAAGTCTGGGCTTGAAGGAGACCTCAGTTAAAGCCTTAGAGGAATCATATAATCAGggggttgattgattgattgatcaatcTTAAAGGCAGGACTGCAGTATACTTTTCCAGGATAATACTAGTACAGTGGGAAATGCACTGCGCTGTTGTGCTATACACTATTGTGCAGTACTCTGCATTCCATTTTTTTTACTGGGTTGGTGGTTGTTTTCAAGATGAATCCATAACTACATTACAATGaagttttttataataataaagaacATTCTTAACGCAAAA

Function

symbol description
smim15 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SMIM15 (small integral membrane protein 15).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-48 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SMIM15 (small integral membrane protein 15).

Ensembl:

ensembl_id ENSDARG00000086699

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069694 True 738 mRNA 0.43 2 16726386 16730368

Neighbor

gene id symbol gene type direction distance location
XLOC_035533 NA coding upstream 5010 16719107 ~ 16721376 (+)
XLOC_035532 si:ch211-198n5.11 coding upstream 37875 16676894 ~ 16688511 (+)
XLOC_035531 NA coding upstream 112915 16609678 ~ 16613471 (+)
XLOC_035529 NA coding upstream 144344 16563953 ~ 16582042 (+)
XLOC_035530 NA coding upstream 148577 16570336 ~ 16577809 (+)
XLOC_035535 ercc8 coding downstream 7914 16738282 ~ 16757285 (+)
XLOC_035536 elovl7a coding downstream 27936 16758304 ~ 16769798 (+)
XLOC_035537 CR925863.1 coding downstream 41806 16772174 ~ 16810253 (+)
XLOC_035538 pde4d coding downstream 259752 16990120 ~ 17044714 (+)
XLOC_035539 NA coding downstream 325511 17055879 ~ 17059377 (+)
XLOC_035527 NA non-coding upstream 460575 16259586 ~ 16265811 (+)
XLOC_035542 NA non-coding downstream 356623 17086991 ~ 17126339 (+)
XLOC_035546 NA non-coding downstream 637673 17368041 ~ 17407080 (+)
XLOC_035551 NA non-coding downstream 1232461 17962829 ~ 17968234 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location