XLOC_035530


Basic Information

Item Value
gene id XLOC_035530
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 16570336 ~ 16577809 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071921
CATTTAAAACAGCTTATATCCTCGCTGTATAAATAATCTAAAGggaaaaagctgttttaaatggaTTATTAATTTGAATTGTATATGTTTTATGTCATTTGCATTCATCTTCATACATTTGTCTTTAAAAGTAAACATGCCGTGAGGTGACCGATGACGCGTAGGATGTGCTCTAACTGAAAAgtatttttgttggtttgttgaaGTGGTGTTAGTGTAGTTTGTTGCGAATATTCTCAGCTGAACGACGATTTGATTCAACAACTGTCGATAAAATGCCCTGTCTGGCGAAAGCCGAAAATCCTGTTACAATGGTTGACCAATACCAGCTCGAACCTCAAAACACGAGCGTCGAAGACGGAGCACGAGTGAAAATGAAGAAGTCCTCTTTTCCAAAATCAGTCTCTTCAAGTGGCACCAATGaTGAGGTGAacatgaagaaaaacaaaaagaacagaCTTGCACGTTTTTTCCAGTCATTGTGCAAGATGTGGTGTCTGAGATCTTCAGAAGATTGTGAAAATGACATCACTGTTGAGGAAttaatgaggaggaggaggatggagGAAGAGGTGACCATGAAAAATGACATTATGGAGAAAAGGAAAGAGAAGATGAAGGTGGAGGTGGAAAAGGAGATGATGGTGGTGGAGAAAGAGAACGTGATGGTGGAGGAGGAAAATGAGATGGAGGTGGTGGAGGAAGAGAACTTGATGGTGGAGGAGGAAAATGAGATGGAGGTGGTGGAGGAAGAGAACGTGATGGTGGAGGAGGAAAATGAGATGGAGGTGGTGGAGGAAGAGAACGTGATGGTGGAGGAGGAAAATGAGATGGAGGTGGTGGAGGAAGAAGAAAACTTGAAGGTGGAGGAGGACAAGAACGTAAAGGTGGAGGAAGAGAACGTGAAGGTGGAGGAGGAAAACAAAAAGGACGTTGATGAAATAAATGAGGGTGAAAAGAAGGAAGAGGAGGTgaagaaaaagaggaggagaaggaggaggccAAGGATAAGTTGTACACAAGAGGACACTATAAAGGAGGAGGTGGAGATGAAAGTGACGGAGGAGGAGAGGATAAAAGAGGCAGAGGAGGAAGAGAAAACGGACAATGAGGTGAGAAAGGAAGctgagaaggaggaggaggaagtgaagaagaagaggaggaggagaagaaggcCAAGGAAAATTGGTACACAAGATATAAAGGAGGAGGTGGAGATGAAGGAGGCAGAGGGGGAAAACAAAATGGACTCTGGTGTGACAAAGGAAGctgagaaggaggaggaggaagtgaagaagaagaagagaaggaggaggaggaaaaagAAAAGTGACAGTGATGAGATAAAGGAGAGTACGAAAATGGAGGAgcagatgaagaagaagaagaggaggaggaggagagtaaAGAAAACTGACACAAAAGACGATCTCCAGAGCAGAGCTGAGGAACCTTTGGTGAATGAGAAAAAAAGGGTgctcttttattatttacagattTGAATtgctgaagaaaaaataaaactgttggaaaaaaactgtttatttctgtttgttaTGTTTGTCTGCTCAGTTGTCTGTTGAAAAGTGTTGAGTTTTGTGTCTGGAGTTGtgttggtgattttattttttctaaaaacatgaTGAACACATGTTGCTAAACTATGAACACATACTTTATGAAACTACcatgttttaaatgataatatatctctgaattcaaatctACAGTGTGGCAGTAGCATTCTGTCATGTTGAGAAATTATTCGACAACATAGACATGAACATCACAAGCtttgtattaaatattgtttttaatgacCCAGTTGTGAAATATTTTAATGCCTTAAAGTAAgagatttcatttattttaatttgaattagAGAAGTGCAcactttttttctcctttttcttaTACGTGGAAACAAAAATGTTGAGCATAGAAACGCAAATAGTCAAATTTAGATGGCACAGTAAACAGGTCTTGTATTTGCTTATTCAGTAATCAATACTCAATGTTACCATAatgcaattaatttatttacaacctAACCTATTAGTTatatattacttttatattattattattgttattgttgatgttgttattattaatattgttattattattacccttATTTGGGTTGAGCCCCGCTAAATATTAGTAGAATCTCCtcttatgtttattcatttattattcattcatttattttgacacaatctacattaaaCGTGCTATGGAAAtcaagatgaattgaatttaattgaattttcctttagctcagtcccttatttatcaggattctccacagcagaatgaactgccaactgttccagcatatgttttatgcagcgagtgcccttccagccgcaacccagtactggaaaacacccatacactttcattaacacacacctttacactacggacaattttggttacccaattcacctacagcgcatgtgtttggactgtgggttaaaccaaagcacccagaggaaacccacaggaacatggggaaaactccacacagaaatgccatctggcccagccatgacttgaaccagcgaccttctgtgaggtgacagtgctacccagcaagccaccatgccacctcatgtattattattattattattattattattattataccctTACTAGATTTGATCCCctctaaaataaaaatcctaGAATTACTCCGccttatgtttattcatttattattattattattatattgcctGAAAGTGTCATAAATGAAAAACATCCATGATAAAATCCAGTGGGATCTCGCACTATAGGCCATAAGGTAGTAAGAAAGTAGCTAGAAAATGGTTTTTGTTCCCACATCTGGGCACTACTTTTTTATGCATTTCTGAATAGACAGCACCCTTATGGATGTTATGTTAAAAGTTCTCCATAAAAAAATACTGCAGTTTTTTGTCAAGATGCATAAATGTGTATAATTAGgaatttacaaaaaactaaaatcttaTGTTGCTAGTTTGGCCtgtaactttattaatatgcattttgGCAACACACAATAATGTGTCAAATTCACTTTTGTACATGTAGCTACATATATGAGACAAGTACTGGTGCATTAATCTACTCAATTTTAATTAAAGACCATGAAATTAAGCATTTTTTACAACCCACCTCAACTTCACATATTGGCTCTTAAtaacactgaagaagatatttGAACTTAAACATGTTTGTtaggttttatttttcaaaaatgttcagtAGCACTAAGGTATCACTCAacgttaaaaataaaatcaattttggtCCAAGTTGGCTGAAATGACATGAAATGCTGGTCTGCTGCACAAATTTTTCAATAACgccaaaaatgtacaaattttacaGAAACTTTATTACAGCTCAAACTGAACTAACATGTGACACAGATCATTTTTACTCATCACTACTCTCCTTATCACTATCATCAGAACCTGAAagtgaagtggattttatactctttaaagtgtgaagttaatctatctattcaaattgtatgtgtataatctgcttgttgacttacatagtattagAAGAATTAAGGTACTATGTAAAGTTAGAAAGGGGAGATGGCCTGAGTAAACAACTAAGGTGTCACAAGAAATGGATGAGAATAGAGCATCACATGTGGAAAAAGTCAGGTATTGATGGATAAGATACATggttaccaggtttgggtcaggggttaaaacTAGGTGGGATCTTGTGTGACAAATGTAGAACAATGTGAAAAACAGCTGCAAAAGAGTATATAAGCAGGCCAGAACATCAGTGAGACAGAATTTTCaggcagagatgctactgggggtcacaaatctcctttgttgtcgacaataaagtatactcttctgatattcataacctccagactgagtttgattcattaagagaaaaaccgaaaaccacaacaaaagctacattttaaacacattttgacaattttttaattttcatacaAAATATCCATTATCCTGTTCTGGAATGCACATATGATCTCACTTATGACAGTCAAACACTCATTTCAGTCTTCTGGTGGCAAAGAGTCTAAGAAACTGAAAAATCTGATGAGCTGCAGACTCTCATACAGATGTTTGTGTGTCCTCATGCTGTGGTTATAGTGATGACCACTCATCACTCCATTGATAGATCCTAGAGCAACAACTTCTGAATAAATGAGTATATCTTGCAGTGCAGCATCTCCAAACCTTTTCCCCAGAATGCCCAGGAAACTCACCTAATTCAGTCACTACAAGCTTTGGCATATTTCGCTTGATTAAAGACTAGCACTATATGATCTTTTCTTATCAAACAGTTACACCCAGAAACAATGATTTAGGTGTCTGCCTCCGGGCTCTTAGATGCAAGATAAACGATGGTCGTGGCAAATGGAGATCACTTTCAGGTTCAAATCATCTGGAATATCAACACAACGGGCTAGTGTTGGTTCTTCAGTTGCACCAATAATCCATGAAATTAGGTTAAACAGATCAAACAGCACAACAGATTTTGCTGccctaatatttaaatcatcaGACGTGGGTGACCATGGACATGTCATACAAGGAGAGTCATCTACAATTCTCTTTAGTATCAATGCCACACTATGAAGTGCCCTTGTGTTCTCTGTAGTACCAGCTATTCTACTTGCTGTGCTTTCACCAATACTTTGGCTAGTTACGTCTGTTGACTCAGTTGTTTCTGTACCTGATGGATGAGGTATTCTTTCTACCAGATGAGGTATTGGTTCTACCAATCTGCAGAAAGGGTCTCAAGAAAAACCAATTCATTGATGTTGTGCTGGTTAGAAGAGTGAAACACCAGCTGGGGGAAATCATGGGACAGCCTCCACTTTAATTTATCctgtctaaaataataaaaatacagtaaatgatgatcacatacacaaaatataaaaaaacattgtcagCTTATTATGATAAAAAAGaggaatattattatttattacatgatGATTACTTATTGTGTGAGAAAAAAAGGTTGCATAAATGTTTATTCAAAAGCTGCAAAAGAAAGTTAAATTACCAGTAGTTAAAGCGTCAAGATCTTCATGGCTCTTTATTCTTTTTGGCATTATTCTTCTTCATTGTCGACACCCCTTGGTTTACAATTATTCGATGGTGGATGACCCTCTCAGAGAAGATCTTGTAGCCTACATCGTAGGTtggctcatttctaataaaaacatgaatattaatgatggttggatggatggatggatggatggatggatgga

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0030163 protein catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0043632 modification-dependent macromolecule catabolic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0006457 protein folding biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0043248 proteasome assembly biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0032299 ribonuclease H2 complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071921 True 5288 lncRNA 0.37 3 16570336 16577809

Neighbor

gene id symbol gene type direction distance location
XLOC_035528 cdkn2c coding upstream 155450 16407884 ~ 16414886 (+)
XLOC_035527 NA coding upstream 304525 16259586 ~ 16265811 (+)
XLOC_035526 elavl4 coding upstream 453224 16004154 ~ 16117112 (+)
XLOC_035525 BX510319.1 coding upstream 1090529 15476625 ~ 15479807 (+)
XLOC_035524 dnttip2 coding upstream 1284027 15277874 ~ 15286309 (+)
XLOC_035531 NA coding downstream 31869 16609678 ~ 16613471 (+)
XLOC_035532 si:ch211-198n5.11 coding downstream 99085 16676894 ~ 16688511 (+)
XLOC_035533 NA coding downstream 141298 16719107 ~ 16721376 (+)
XLOC_035534 smim15 coding downstream 148577 16726386 ~ 16730368 (+)
XLOC_035535 ercc8 coding downstream 160473 16738282 ~ 16757285 (+)
XLOC_035515 CR450798.1 non-coding upstream 1764046 14806174 ~ 14806290 (+)
XLOC_035513 NA non-coding upstream 1917686 14612986 ~ 14652650 (+)
XLOC_035512 NA non-coding upstream 2008906 14558645 ~ 14561430 (+)
XLOC_035537 CR925863.1 non-coding downstream 194365 16772174 ~ 16810253 (+)
XLOC_035539 NA non-coding downstream 478070 17055879 ~ 17059377 (+)
XLOC_035542 NA non-coding downstream 509182 17086991 ~ 17126339 (+)

Expression


Co-expression Network