XLOC_035524 (dnttip2)


Basic Information

Item Value
gene id XLOC_035524
gene name dnttip2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 15277874 ~ 15286309 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069679
GGAGAACGTGGGTCTCGTGGGCGGAAGTGCGTCCGGAGCCATAGTGGCAACATGGTGGCCACCAGAAGAGGAACACGCGCAGGTTCCCCGGTGAAAAACACCAGCGATGAAAACTCTGAAAACGCTAAGAAGCCTACTCCTTCGACTAGAAGAACTCGACGCAAGACACTGACGGAGGAAAATCAGTCCCAGTCGGATTCCCAGCCAGATGAGCCGAAGGATGACAGTACTGCCTCTTCCCTAGCAAGTCCACCTAAGAAAGACACTAGAAGATCCACACGTCTCACTGTTAACAAAAAGCAGCCAGACTCTACTCATGAAGCGGATGTTTCTGAATCAGAATCCTGCTGCTCTGTAGCTTCCGGTGTACAACCCACACCTAGAACCCGCCGAAGAACTGCAGTCAGAGACAAGCGCACCATTGAAGAGGAGGCATCCGAAGCTGAATCTTGCTCCTCGGCAGCATCAGCGACCCATTCCCGCACTGCCCCACGAAGCCTCAGGAAACGAGTTTTGACTTCAGCTTCCGCAAAAGATGCAGATGCCTCTGGGGCTGAGTCTTGCAGTTCTGCGGTGTCACTCACCAAAGGTACGGACACTCAACGGATGACTAGGAGTCATCAAAAAACTGCTGTTCCCACCAGAGATGCAGATCAGTCTGAACCAGAATCATGTTCCTCCAGTGTTTCTGGCCTTCGTGGATCTGTGGTGCGCAGATCTACACGAAACCAGAAGGTGACAGTGACCGAGCCGATCCCTTTGAACTTAGAAGAAACTACAGACGCCCCTTCTTCTCCAGTGTCCAGGAAGCCTAGAGGGCGTAGGCGAAAAACAGAAGGTAATGATGATGAGTCTGATGGATGCAAGTCTGGTCCCAGCATGAGTCCCTGGAGATCCCTTAGGCGCCAGCCAAAAGGTGACACCATAGTTGGTGAATCTGATTCAGAATCGGTAGCTACTGACGTCTGCACCTCTCATGGGAGTCCAAGCCCTCAAAGAGGAAGAGGAACACCTTGTAGTAGCCGAACTGGGTCTGCAAGCAGCAACCGTGCTGTTCCTGCAAGCAGGACGAGAAGTAAAGCTAAAGTGATTACTTCTGCCATGTCTGAGGAACAAAGTGAAGATGAGCAACTTGTAACTCATCATGAAGGTATTCAAGCACCTGAAGAACAACTGGATCAAACCATGACCATGGAAACCAGTGAAGCTCAAGAGAGCACCATGATTGAGGAGGGAGCTGAAGATACTACTATAGTTGAGGATGAGCCTGTTGAGATGCTAGAAGTTCAAAGCAGCTCAAAAGAAGTCAAGAAGATAGAGGATCATGGAATTATCATGAAAGAAACAGGAACTGAAACTTCATTAAAGGAAGCCGAGTTTATGGAAACACTTTCAGAGTCCGTAGTAGAAGCCACCTCAAAAGTCCCAGAGAAGGTTGACGAGGCCATTGAGGATCAAACATGTGCTGAGCCTGTAAAAGAGGATGCCATTCATGAAGATGCAGTCATGGTTGAGGATGCTTCTGAGCCTGAAAAAGCAGGATCCAACCAAAAAGATACAGAGATGATTGAAGTTCAAACATGTCCTGAACCTGCAAAAGAGGAAACAACTGAAGAAGCTTCAGTCATGGTTAAAGAGGATGCAGAGTTTCAAACATCATTAGAGCCCTCAAAAGAGGAAACCATCCAAACAAATGTAGCCCTGATTGAGGAGGCTCAAACATCAGCTGAACCAGCGGAAAAGGTAAAAGTCACTTCAGACGATCCAGAACCAGCCGTGATCGAGGAGAAGAAAGGTGTGACGGTTACAGAGGAATCAAATGAATTGATTAAGACAACTGATGATGACTCTGATGCTGGCCCTTCTACAAGCTCAAATACTCGAGTAGATTTGAGCACCGCAGAAGAATCATCCAAGGAGCACCCTGCTCAAAAAGAAATGATCAGTTTACTGGACAGCAGTGATGAAGAAGATAGTGGTGACGAAGGTCTGTCTGCAGAAGAAGAGGGCGGTTCACAGGAAGATGAAGATGATTTAATTTGTCCTGATGATGAACCGATGCCAGAAGAAGCAGAGGCTCATGGTAATGGACTGTTTGTCATAGACACTAGACCTGGGCTACGACCTGAAGACCAGTACTATGTGGATGCCAAGCAAACTGAGGaagaggatgaggaggaggaCTATGTTGACGAGGAAggagatgatgaggatgatgaagattCAAAGGTGCTTTTTGCTCCCAAAAAGCCTCTGATGCAACTCTCTACTTCCATTGACACGGGTTTGAAATTGAAGGAGCTTGGTGGTTTGTACGTCAGTTTTGATGGCAACAAACCAAAGACTCTTTCCAGGGTCTTGAAGGCCCAGAAGGACGTGGGCGGTCAGGATGAGTTGTTAAAGAAGAGTGTTATCATTCCGGGTTTTGAGAAGATGGATGCTGTGCCACCGTGCAGGGAATCAAAGCACGCTGCTAAACTCAAACGCAAGGCGGAAAGAGAAAAGACGACTGGCGATGGCTGGTTCAACATGAGAGCTCCTGAATTAACAGAGGAGCTGAAAAATGACCTGAAGGCACTGAAGATGCGTGCAGCCATGGACCCCAAGCGCTTCTACAAGAAGAATGATAGAGAAGGCTTTCCAAAGTACTTTCAGGTTGGCACAGTGGTTGACAGCCCTGTAGACTTTTATAATTCACGAATGGCTAAGAAACAAAGGAAACGTACCATTGTGGAGGAGCTTCTTGCTGATGCTGAGTTTAGAAGCTCTAATAAAAGGAGATATCAGGAGATCATGGCAGAAAAAGCAGCACAGGCCGCTGGAAAGCAGCACAGAAAGAAGCACACAAAGTTctctaaaaagaaaacaaataaataatttcatgAGGCAAATCAGATTATTTTTCCctcttatgtttttttatttttaataaaaaaaaaaacatttcaagagATTGTCAAGCTTTTGTAAATAGAAGCCCACCATATTTTGTTTTAGTAAATTTCTGAGAAGGTTATTTTGGTATTAATGTGCAACTTGTACAGAGAAAGTAAAGAagattttatactttttaaaggtTGACTTTCACTTGGCTTAAGATTACGTCGAGAACATCTGTCAGAATGTGGAATCCCAATAAATCTTCCAATACCAA

Function

symbol description
dnttip2 Predicted to be involved in RNA processing. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in several structures, including digestive system; immature eye; mesoderm; musculature system; and nervous system. Orthologous to human DNTTIP2 (deoxynucleotidyltransferase terminal interacting protein 2).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-080513-5 Predicted to be involved in RNA processing. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in several structures, including digestive system; immature eye; mesoderm; musculature system; and nervous system. Orthologous to human DNTTIP2 (deoxynucleotidyltransferase terminal interacting protein 2).

Ensembl:

ensembl_id ENSDARG00000057648

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069679 True 3154 mRNA 0.46 7 15277874 15286309

Neighbor

gene id symbol gene type direction distance location
XLOC_035523 gclm coding upstream 622 15269423 ~ 15277252 (+)
XLOC_035522 slc5a9 coding upstream 8942 15254564 ~ 15268932 (+)
XLOC_035521 zgc:171480 coding upstream 24074 15251448 ~ 15253800 (+)
XLOC_035520 paox1 coding upstream 27609 15239549 ~ 15250265 (+)
XLOC_035519 fnbp1l coding upstream 197301 14986833 ~ 15080573 (+)
XLOC_035525 BX510319.1 coding downstream 190316 15476625 ~ 15479807 (+)
XLOC_035526 elavl4 coding downstream 717845 16004154 ~ 16117112 (+)
XLOC_035527 NA coding downstream 973277 16259586 ~ 16265811 (+)
XLOC_035528 cdkn2c coding downstream 1121575 16407884 ~ 16414886 (+)
XLOC_035529 NA coding downstream 1277644 16563953 ~ 16582042 (+)
XLOC_035515 CR450798.1 non-coding upstream 471584 14806174 ~ 14806290 (+)
XLOC_035513 NA non-coding upstream 625224 14612986 ~ 14652650 (+)
XLOC_035512 NA non-coding upstream 716444 14558645 ~ 14561430 (+)
XLOC_035511 BX294388.1 non-coding upstream 862051 14415698 ~ 14415823 (+)
XLOC_035509 NA non-coding upstream 1031521 14241585 ~ 14246353 (+)
XLOC_035530 NA non-coding downstream 1284027 16570336 ~ 16577809 (+)
XLOC_035531 NA non-coding downstream 1323369 16609678 ~ 16613471 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_05426981_05432228 NA coding CI01000010 null 5426981 ~ 5432228 (-)