XLOC_035522 (slc5a9)


Basic Information

Item Value
gene id XLOC_035522
gene name slc5a9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 15254564 ~ 15268932 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069675
ATGCCAGCTTCACCTGAGCCTGTGACGGCCACTCCAGAGCCCGAGGAGGTGCCAGCCAAGTTTACTTTGGAGGCTGCTGATATCGCAGTGGTTGTGGTTTACTTTGTGTTTGTATTGGCAGTTGGAATATGGTCTTCCATCAGAGCCAACCGTGGAACAGTGGGTGGATATTTCTTGGCAGGACGATCCATGACCTGGTGGCCAATTGGAGCCTCTCTGATGTCCAGTAACGTCGGCAGTGGCTTGTTCATCGGATTAGCTGGGACAGGAGCCGCTGGGGGACTCGCCGTCGGGGGATTTGAGTGGAATGCAGCGTGGGTCCTCATCGCCCTGGGCTGGATTTTTGTGCCCGTATATATTTCTGCTGGAGTGGTCACCATGCCGGAGTATCTGAGGAAGAGGTTTGGGGGTCAGCGAATCCGGATCTACATGAGTGTGCTGTCTCTCATCCTCTACATTTTAACCAAGATATCAACAGACATTTTTTCAGGGGCTTTATTCATTCAGGTGTCACTGGGGTGGGATCTTTATCTCTCCACTGTTATTCTGCTGGCCGTCACTGCACTCTATACTATAGCTGGTGGACTGACAGCAGTGATCTACACTGACGCCTTGCAGACCGTCATCATGGTAATAGGAGCATTTGTCCTCATGTTCATAGCATTTGACAAGGTTGGATGGTACGAGGGTTTGCTGGTTCAGTATGAGAAAGCTGCACCTGCTCTCACAGTTCCCAACACCACTTGTCATCTTCCTCGCTCTGATGCCTTTCATATCTTCAGAGACCCAGTGACGGGAGATATTCCCTGGCCCGGCCTGATCTTCGGCCTTACCGTTCTGGCCACATGGGTCTGGTGCACAGACCAGGTGATAGTGCAAAGGTCTCTGTCGGCAAAAAACCTGTCTCATGCCAAAGCTGGTTCAGTGCTCGGTGGCTACCTCAAGGTCTTCCCTATGTTCTTCGTAGTCATGCCAGGAATGATCAGCAGAGCTCTCTATCCTGATGAAGTAGCATGTGTTGATCCCGATGAGTGTCAGAAGATCTGTGGGGCCAAGGTCGGCTGCTCGAACATTGCCTACCCAAAATTAGTGGTGGAGCTCATGCCAGTGGGTATGAGAGGGCTGATGATCGCTGTAATGATGGCAGCACTCATGTCCTCTCTCACCTCTATATTCAACAGCAGCAGCACCTTATTCACTATGGACATCTGGCAGCGGATCCGGCCCCGGGCCTCTGAGAAAGAGCTCATGGTAGTGGGCAGagtgtttattttattgctaGTGGCCTTGAGCATTGTGTGGATTCCAGTCATTCAAACGGCTAATAGTGGACAGCTGTTTGACTACATTCAGGCTATAACTAGCTTCCTGTCACCTCCCATCACCACAGTGTTCATTATGGCCATATTTTGGGGGAGAGTAAATGAACAGGGAGCTTTTTGGGGTCTGATGGTGGGACTAGTGGTGGGCATGGTGAGGATGATAATGGAATTTGTCTATGGCACACCATCATGTGGAGAGACAGACCTGCGTCCCAGCCTGCTGAAGGATGTGCACTACCTGTATTTTGCGCTTATTCTGCTCGCCCTGACAGTTCTGATCATCACAGCCGTCAGCCTCTGCACTGCACCTATTCCAGAAAAACACCTTGTTCGTTTGACCTGGTGGACAAGACACAGTAAGGAGGAGCGTGTAGAGCTGGAAGACCCCTGGGCCAAACCAGCAGGCTCTGATCTCAGCACAACGGAGTCAGAGGGGTCGGATGAGGACGCGCCTGCATGGTGGAAACGTGCTGGAATGTGGCTGTGTGGACTCTCCCAAACGACTAAACAAGACCTGACTGAGGAGGAACGGCAGGCACTGGAAAAGAAACTCACTAGTATTGAAGAAGACCACATGTGGAAGACTGTGTGCAACGTCAATGCCCTCATTTTGCTCACTGCCAATGTGTTTCTTTGGGGGTACTTTGCTTGAATGTACTGTAAAGTTCTATAATGGCTAATTGTTTTGTTAGAAACTAATAGTTTAAGTGTTGACGTTGGCACTTTGAAcactcatttttatttaaaatgttttgaataacattttatttgaagtttgttgcaaacaatattaaataattactGCTGTGCCATAATGACAAAgccatgaatgaatgcataaataaataaataataaatatataaaa
>TCONS_00069676
CGAGGAGGTGCCAGCCAAGTTTACTTTGGAGGCTGCTGATATCGCAGTGGTTGTGGTTTACTTTGTGTTTGTATTGGCAGTTGGAATATGGTCTTCCATCAGAGCCAACCGTGGAACAGTGGGTGGATATTTCTTGGCAGGACGATCCATGACCTGGTGGCCAATTGGAGCCTCTCTGATGTCCAGTAACGTCGGCAGTGGCTTGTTCATCGGATTAGCTGGGACAGGAGCCGCTGGGGGACTCGCCGTCGGGGGATTTGAGTGGAATCGTGGGTCCTCATCGCCCTGGGCTGGATTTTTGTGCCCGTATATATTTCTGCTGGAGTGGTCACCATGCCGGAGTATCTGAGGAAGAGGTTTGGGGGTCAGCGAATCCGGATCTACATGAGTGTGCTGTCTCTCATCCTCTACATTTTAACCAAGATATCAGTAAGATCTTTGGGTGGACTGACAGCAGTGATCTACACTGACGCCTTGCAGACCGTCATCATGGTAATAGGAGCATTTGTCCTCATGTTCATA

Function

symbol description
slc5a9 Predicted to enable glucose:sodium symporter activity. Predicted to be involved in sodium ion transport. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Orthologous to human SLC5A9 (solute carrier family 5 member 9).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005412 glucose molecular_function
GO:0022857 transmembrane transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-080513-3 Predicted to enable glucose:sodium symporter activity. Predicted to be involved in sodium ion transport. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Orthologous to human SLC5A9 (solute carrier family 5 member 9).

Ensembl:

ensembl_id ENSDARG00000005518

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069675 False 2188 mRNA 0.48 13 15254564 15268932
TCONS_00069676 True 522 nonsense_mediated_decay 0.51 5 15254605 15259417

Neighbor

gene id symbol gene type direction distance location
XLOC_035521 zgc:171480 coding upstream 764 15251448 ~ 15253800 (+)
XLOC_035520 paox1 coding upstream 4299 15239549 ~ 15250265 (+)
XLOC_035519 fnbp1l coding upstream 173991 14986833 ~ 15080573 (+)
XLOC_035518 abl2 coding upstream 269288 14915332 ~ 14985276 (+)
XLOC_035517 soat1 coding upstream 344341 14886452 ~ 14910223 (+)
XLOC_035523 gclm coding downstream 491 15269423 ~ 15277252 (+)
XLOC_035524 dnttip2 coding downstream 8942 15277874 ~ 15286309 (+)
XLOC_035525 BX510319.1 coding downstream 207693 15476625 ~ 15479807 (+)
XLOC_035526 elavl4 coding downstream 735222 16004154 ~ 16117112 (+)
XLOC_035527 NA coding downstream 990654 16259586 ~ 16265811 (+)
XLOC_035515 CR450798.1 non-coding upstream 448274 14806174 ~ 14806290 (+)
XLOC_035513 NA non-coding upstream 601914 14612986 ~ 14652650 (+)
XLOC_035512 NA non-coding upstream 693134 14558645 ~ 14561430 (+)
XLOC_035511 BX294388.1 non-coding upstream 838741 14415698 ~ 14415823 (+)
XLOC_035509 NA non-coding upstream 1008211 14241585 ~ 14246353 (+)
XLOC_035529 NA non-coding downstream 1295021 16563953 ~ 16582042 (+)
XLOC_035530 NA non-coding downstream 1301404 16570336 ~ 16577809 (+)
XLOC_035531 NA non-coding downstream 1340746 16609678 ~ 16613471 (+)

Expression


Co-expression Network