XLOC_035533


Basic Information

Item Value
gene id XLOC_035533
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 16719107 ~ 16721376 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072170
TCCAGGTTGGGATTTAGGAGTCGTGATGTAGCCACACATAACTAGCAAAAAGGACCAGACAACAgaacataaaacaacaaagaGGCAGGCAACGAAGTGAGACATGTAAAACAGAGCAGACAGGGTTAGTTTTGAACATCGTCTGACACCACAAAAGCAGTGCAGTCAGTAGACACGCATCTCCATAGTTTGTTCTTATTAACATTTTGTAAATTGAGACCCACAGCCAAATGATTTTGATGACCCTTTTAGTAGGACTTTCCCCAGAAAGGACAAAGGATGagtgtgtaaaaaaacaaaacacaagcctAAAATCTCAAAAAACATTAACATGGgtacattatattaaatatatacacaacttttcaaatgtttgtgtaaatcttaaatatatattaagtaaTCTCGTctgatattataatatattaaaagtttTATACAAAAGGTGAACGCATAAGCTTTTCATTAATAAATGGTTTGTTAGAACAGGCTAAAATATGGCTGAGATTAGGACTGCACAACACATCACTTCAGGATTGATATCGCAATTTGTTAATCTGCAATAGTTACATCGCTGAATATGCAATGTCAAATTGCATTCATAGTTAGAACCACAATTTAGAATATGTCAATTGTGGAGTCATCGCAAATTTTAACCCTAAAATTGAGAGAAAGTTTTTCATTTCaatgtgtttttaagacctgtTACTGTGTACAATTTAAGCAAATTTATAGGTGCTgtttgtaagtttgacacccagtggttgaactagatatTACAtccctggatcaaaacaaacacaagtgcaGagcctttctgagtgaataaattaatgaattacgcggttttccaccaaggcaacccggagtGCTGGAATattattggctaaactggcattggacaggttaaaagaaccaaaacaaagacagaagttCCGGCACtgaaagcacatttttaaaagcagaatacttgacttcagcattgtttttcagataaacaaaaatgttcacttagcatgtttctgaaatatcagCATACATataatggtatttttatgctttagaagagtcaaaaacttacatacagcacctttaaactaAGACATTAGAAAAGGCATATAAACCAAAatctattgtttttaattatttttacaatgaagactatacactATACGGTCTTATTTTATCTACTATTAATACATTTCTGTACCTCATACGTTTAGATTCCACAGAAATCataaaattaatttgtatttgttcAATTGTATTGTACATTATGCTAACTCCTCTACAAAAAAatcccaatcaatgtaaaaatACTAATCAATTCCAAACAGAGTTATGTTATAAGTCAtcttttgaaaataaatgtatatcTTAATATACATTGCAGACAAACAAAATATCGTAATATCAGTTattttctaatatcgtgcagccctagctgAGATTTTTGAATATCGGGAATCTAAggcttaaaaaaacagaaaattgcctttaaaatgatccaaattaaaatttttgcaaaggacattacaaataaaaaattatcaaGTTTTGATTTATTCATAAGGCAATTGACAAAATATCTACATGGAGCATGAACTTTACTTAATATGCTAATGCTTTGTAGAATGAAACAAAATTGTTAATTTTTACCCATAcactgtatttttggcttttgctAACATTTCTGAACAACATAAAACTGCTTTTGTGGTCCATGAccacacatatttaaaaataattattgctgTATTGGCAAATCCGTCTATTATTTGGAGTTTGCAAAACATACTTTTGCTTCTTAATATTTTTGTTAAGTTAAATcagaattttttataaataataataaaaaaatcaaaaggagaAGCATTTCAGTGTTGATCTTTAAAGTTAAATAGATAAatcttaccttaaaaaaataccTTAGATAATCCTGAACACCAAACTTTTTGAACAGTGGTGTATATGTAACCAGTTAATTACAGCATAACCTGATCACAGACATGCAAAATCCAAAACATGTTTCATACATACCCAGGATGTTGACAAAGA

Function

GO:

id name namespace
GO:0007268 chemical synaptic transmission biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0044459 obsolete plasma membrane part cellular_component
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component
GO:0022836 gated channel activity molecular_function
GO:0022839 ion gated channel activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072170 True 2058 lncRNA 0.31 2 16719107 16721376

Neighbor

gene id symbol gene type direction distance location
XLOC_035532 si:ch211-198n5.11 coding upstream 30596 16676894 ~ 16688511 (+)
XLOC_035531 NA coding upstream 105636 16609678 ~ 16613471 (+)
XLOC_035529 NA coding upstream 137065 16563953 ~ 16582042 (+)
XLOC_035530 NA coding upstream 141298 16570336 ~ 16577809 (+)
XLOC_035528 cdkn2c coding upstream 304221 16407884 ~ 16414886 (+)
XLOC_035534 smim15 coding downstream 5010 16726386 ~ 16730368 (+)
XLOC_035535 ercc8 coding downstream 16906 16738282 ~ 16757285 (+)
XLOC_035536 elovl7a coding downstream 36928 16758304 ~ 16769798 (+)
XLOC_035537 CR925863.1 coding downstream 50798 16772174 ~ 16810253 (+)
XLOC_035538 pde4d coding downstream 268744 16990120 ~ 17044714 (+)
XLOC_035527 NA non-coding upstream 453296 16259586 ~ 16265811 (+)
XLOC_035525 BX510319.1 non-coding upstream 1239300 15476625 ~ 15479807 (+)
XLOC_035539 NA non-coding downstream 334503 17055879 ~ 17059377 (+)
XLOC_035542 NA non-coding downstream 365615 17086991 ~ 17126339 (+)
XLOC_035546 NA non-coding downstream 646665 17368041 ~ 17407080 (+)
XLOC_035551 NA non-coding downstream 1241453 17962829 ~ 17968234 (+)

Expression


Co-expression Network