RNA id: TCONS_00072170


Basic Information

Item Value
RNA id TCONS_00072170
length 2058
lncRNA type antisense_over
GC content 0.31
exon number 2
gene id XLOC_035533
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 16719107 ~ 16721376 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCAGGTTGGGATTTAGGAGTCGTGATGTAGCCACACATAACTAGCAAAAAGGACCAGACAACAgaacataaaacaacaaagaGGCAGGCAACGAAGTGAGACATGTAAAACAGAGCAGACAGGGTTAGTTTTGAACATCGTCTGACACCACAAAAGCAGTGCAGTCAGTAGACACGCATCTCCATAGTTTGTTCTTATTAACATTTTGTAAATTGAGACCCACAGCCAAATGATTTTGATGACCCTTTTAGTAGGACTTTCCCCAGAAAGGACAAAGGATGagtgtgtaaaaaaacaaaacacaagcctAAAATCTCAAAAAACATTAACATGGgtacattatattaaatatatacacaacttttcaaatgtttgtgtaaatcttaaatatatattaagtaaTCTCGTctgatattataatatattaaaagtttTATACAAAAGGTGAACGCATAAGCTTTTCATTAATAAATGGTTTGTTAGAACAGGCTAAAATATGGCTGAGATTAGGACTGCACAACACATCACTTCAGGATTGATATCGCAATTTGTTAATCTGCAATAGTTACATCGCTGAATATGCAATGTCAAATTGCATTCATAGTTAGAACCACAATTTAGAATATGTCAATTGTGGAGTCATCGCAAATTTTAACCCTAAAATTGAGAGAAAGTTTTTCATTTCaatgtgtttttaagacctgtTACTGTGTACAATTTAAGCAAATTTATAGGTGCTgtttgtaagtttgacacccagtggttgaactagatatTACAtccctggatcaaaacaaacacaagtgcaGagcctttctgagtgaataaattaatgaattacgcggttttccaccaaggcaacccggagtGCTGGAATattattggctaaactggcattggacaggttaaaagaaccaaaacaaagacagaagttCCGGCACtgaaagcacatttttaaaagcagaatacttgacttcagcattgtttttcagataaacaaaaatgttcacttagcatgtttctgaaatatcagCATACATataatggtatttttatgctttagaagagtcaaaaacttacatacagcacctttaaactaAGACATTAGAAAAGGCATATAAACCAAAatctattgtttttaattatttttacaatgaagactatacactATACGGTCTTATTTTATCTACTATTAATACATTTCTGTACCTCATACGTTTAGATTCCACAGAAATCataaaattaatttgtatttgttcAATTGTATTGTACATTATGCTAACTCCTCTACAAAAAAatcccaatcaatgtaaaaatACTAATCAATTCCAAACAGAGTTATGTTATAAGTCAtcttttgaaaataaatgtatatcTTAATATACATTGCAGACAAACAAAATATCGTAATATCAGTTattttctaatatcgtgcagccctagctgAGATTTTTGAATATCGGGAATCTAAggcttaaaaaaacagaaaattgcctttaaaatgatccaaattaaaatttttgcaaaggacattacaaataaaaaattatcaaGTTTTGATTTATTCATAAGGCAATTGACAAAATATCTACATGGAGCATGAACTTTACTTAATATGCTAATGCTTTGTAGAATGAAACAAAATTGTTAATTTTTACCCATAcactgtatttttggcttttgctAACATTTCTGAACAACATAAAACTGCTTTTGTGGTCCATGAccacacatatttaaaaataattattgctgTATTGGCAAATCCGTCTATTATTTGGAGTTTGCAAAACATACTTTTGCTTCTTAATATTTTTGTTAAGTTAAATcagaattttttataaataataataaaaaaatcaaaaggagaAGCATTTCAGTGTTGATCTTTAAAGTTAAATAGATAAatcttaccttaaaaaaataccTTAGATAATCCTGAACACCAAACTTTTTGAACAGTGGTGTATATGTAACCAGTTAATTACAGCATAACCTGATCACAGACATGCAAAATCCAAAACATGTTTCATACATACCCAGGATGTTGACAAAGA

Function

GO:

id name namespace
GO:0007268 chemical synaptic transmission biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0044459 obsolete plasma membrane part cellular_component
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component
GO:0022836 gated channel activity molecular_function
GO:0022839 ion gated channel activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00069693 lncRNA upstream 30614 16684915 ~ 16688493 (+) True XLOC_035532
TCONS_00069692 lncRNA upstream 35940 16682253 ~ 16683167 (+) False XLOC_035532
TCONS_00069691 lncRNA upstream 37635 16676965 ~ 16681472 (+) False XLOC_035532
TCONS_00072169 lncRNA upstream 105636 16609678 ~ 16613471 (+) True XLOC_035531
TCONS_00072168 lncRNA upstream 137065 16563953 ~ 16582042 (+) True XLOC_035529
TCONS_00069697 lncRNA downstream 22686 16744062 ~ 16755717 (+) False XLOC_035535
TCONS_00069698 lncRNA downstream 22980 16744356 ~ 16748866 (+) True XLOC_035535
TCONS_00069700 lncRNA downstream 37088 16758464 ~ 16763631 (+) True XLOC_035536
TCONS_00072171 lncRNA downstream 334503 17055879 ~ 17059377 (+) True XLOC_035539
TCONS_00072172 lncRNA downstream 365615 17086991 ~ 17097453 (+) False XLOC_035542
TCONS_00069689 mRNA upstream 30596 16676894 ~ 16688511 (+) False XLOC_035532
TCONS_00069688 mRNA upstream 304221 16408385 ~ 16414886 (+) True XLOC_035528
TCONS_00069687 mRNA upstream 306978 16407884 ~ 16412129 (+) False XLOC_035528
TCONS_00069684 mRNA upstream 601995 16004551 ~ 16117112 (+) False XLOC_035526
TCONS_00069686 mRNA upstream 606093 16025554 ~ 16113014 (+) True XLOC_035526
TCONS_00069694 mRNA downstream 5010 16726386 ~ 16730368 (+) True XLOC_035534
TCONS_00069695 mRNA downstream 16906 16738282 ~ 16748516 (+) False XLOC_035535
TCONS_00069696 mRNA downstream 16945 16738321 ~ 16757285 (+) False XLOC_035535
TCONS_00069699 mRNA downstream 36928 16758304 ~ 16769798 (+) False XLOC_035536
TCONS_00069702 mRNA downstream 268744 16990120 ~ 17044714 (+) False XLOC_035538
TCONS_00069690 other upstream 30645 16676937 ~ 16688462 (+) False XLOC_035532
TCONS_00069685 other upstream 639314 16023470 ~ 16079793 (+) False XLOC_035526
TCONS_00069678 other upstream 1443670 15269863 ~ 15275437 (+) True XLOC_035523
TCONS_00069676 other upstream 1459690 15254605 ~ 15259417 (+) True XLOC_035522
TCONS_00069671 other upstream 1638534 15078120 ~ 15080573 (+) True XLOC_035519
TCONS_00069701 other downstream 50798 16772174 ~ 16810253 (+) True XLOC_035537
TCONS_00069704 other downstream 348201 17069577 ~ 17073371 (+) False XLOC_035540
TCONS_00069707 other downstream 365684 17087060 ~ 17097065 (+) True XLOC_035542
TCONS_00069740 other downstream 1948861 18670237 ~ 18670362 (+) True XLOC_035562
TCONS_00069742 other downstream 2301885 19023261 ~ 19023377 (+) True XLOC_035565

Expression Profile

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