Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00069691 |
| length | 772 |
| lncRNA type | retained_intron |
| GC content | 0.47 |
| exon number | 3 |
| gene id | XLOC_035532 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007119.7 |
| NCBI id | CM002892.2 |
| chromosome length | 54304671 |
| location | 16676894 ~ 16688511 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006552 | leucine catabolic process | biological_process |
| GO:1905202 | methylcrotonoyl-CoA carboxylase complex | cellular_component |
| GO:0005739 | mitochondrion | cellular_component |
| GO:0004485 | methylcrotonoyl-CoA carboxylase activity | molecular_function |
| GO:0016874 | ligase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050411-52 | Predicted to enable ligase activity. Predicted to contribute to methylcrotonoyl-CoA carboxylase activity. Predicted to be involved in leucine catabolic process. Predicted to be part of methylcrotonoyl-CoA carboxylase complex. Predicted to be active in mitochondrion. Is expressed in myotome. |
| ensembl_id | ENSDART00000134041 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00072169 | lncRNA | upstream | 63494 | 16609678 ~ 16613471 (+) | True | XLOC_035531 |
| TCONS_00072168 | lncRNA | upstream | 94923 | 16563953 ~ 16582042 (+) | True | XLOC_035529 |
| TCONS_00071921 | lncRNA | upstream | 99156 | 16570336 ~ 16577809 (+) | True | XLOC_035530 |
| TCONS_00072167 | lncRNA | upstream | 411154 | 16259586 ~ 16265811 (+) | True | XLOC_035527 |
| TCONS_00069680 | lncRNA | upstream | 1197158 | 15476625 ~ 15479807 (+) | True | XLOC_035525 |
| TCONS_00069692 | lncRNA | downstream | 781 | 16682253 ~ 16683167 (+) | False | XLOC_035532 |
| TCONS_00069693 | lncRNA | downstream | 3443 | 16684915 ~ 16688493 (+) | True | XLOC_035532 |
| TCONS_00072170 | lncRNA | downstream | 37635 | 16719107 ~ 16721376 (+) | True | XLOC_035533 |
| TCONS_00069697 | lncRNA | downstream | 62590 | 16744062 ~ 16755717 (+) | False | XLOC_035535 |
| TCONS_00069698 | lncRNA | downstream | 62884 | 16744356 ~ 16748866 (+) | True | XLOC_035535 |
| TCONS_00069688 | mRNA | upstream | 262079 | 16408385 ~ 16414886 (+) | True | XLOC_035528 |
| TCONS_00069687 | mRNA | upstream | 264836 | 16407884 ~ 16412129 (+) | False | XLOC_035528 |
| TCONS_00069684 | mRNA | upstream | 559853 | 16004551 ~ 16117112 (+) | False | XLOC_035526 |
| TCONS_00069686 | mRNA | upstream | 563951 | 16025554 ~ 16113014 (+) | True | XLOC_035526 |
| TCONS_00069683 | mRNA | upstream | 622651 | 16004230 ~ 16054314 (+) | False | XLOC_035526 |
| TCONS_00069694 | mRNA | downstream | 44914 | 16726386 ~ 16730368 (+) | True | XLOC_035534 |
| TCONS_00069695 | mRNA | downstream | 56810 | 16738282 ~ 16748516 (+) | False | XLOC_035535 |
| TCONS_00069696 | mRNA | downstream | 56849 | 16738321 ~ 16757285 (+) | False | XLOC_035535 |
| TCONS_00069699 | mRNA | downstream | 76832 | 16758304 ~ 16769798 (+) | False | XLOC_035536 |
| TCONS_00069702 | mRNA | downstream | 308648 | 16990120 ~ 17044714 (+) | False | XLOC_035538 |
| TCONS_00069685 | other | upstream | 597172 | 16023470 ~ 16079793 (+) | False | XLOC_035526 |
| TCONS_00069678 | other | upstream | 1401528 | 15269863 ~ 15275437 (+) | True | XLOC_035523 |
| TCONS_00069676 | other | upstream | 1417548 | 15254605 ~ 15259417 (+) | True | XLOC_035522 |
| TCONS_00069671 | other | upstream | 1596392 | 15078120 ~ 15080573 (+) | True | XLOC_035519 |
| TCONS_00069670 | other | upstream | 1598666 | 15069700 ~ 15078299 (+) | False | XLOC_035519 |
| TCONS_00069701 | other | downstream | 90702 | 16772174 ~ 16810253 (+) | True | XLOC_035537 |
| TCONS_00069704 | other | downstream | 388105 | 17069577 ~ 17073371 (+) | False | XLOC_035540 |
| TCONS_00069707 | other | downstream | 405588 | 17087060 ~ 17097065 (+) | True | XLOC_035542 |
| TCONS_00069740 | other | downstream | 1988765 | 18670237 ~ 18670362 (+) | True | XLOC_035562 |
| TCONS_00069742 | other | downstream | 2341789 | 19023261 ~ 19023377 (+) | True | XLOC_035565 |
