XLOC_035532 (si:ch211-198n5.11)


Basic Information

Item Value
gene id XLOC_035532
gene name si:ch211-198n5.11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 16676894 ~ 16688511 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069689
GCTTGTTTCCTTCCAGACCTATTTTCTGGTTACACTGTATCATATTCAATAACTTTAGAGCTGTGCCTGTTGTCTCATCATGCACTGTTGTTTATTACGATCTTTCAACATAAATGGGAATAAACTCAATCATCATCTCGCCAGAGCGTCATTCTCTCAAAATCCACAGTCATGGCATCCATCAGCAAAGTTTGCCAGCAGCTCTGCACACCCCTGCACACATACAGGTGGCTGGTGGCGACCCATCACACAGctgccatcatcatcatcaaagcGCTGTATGAGCTCTAGGAGACGCCTGCCAAGTGCATTTCCAGTTCTAGATGGAGCATTTCTTCCTGCTGTCAGACACGTGTATGAAGCCAATCTAAGGAACAGCCTCGTCTGTCAGCAGAAATACTTCGAGCACAAGGAGAAGGTGATGAAGGGTGGTGGTGAAAACGCTATAGCGCGGCACACACAGAGGAATCAAAAGGTTCTGGTACGAGAACGACTACGCATGTTGCTGGATGATGAAGATTATCTAGAGCTCTCGCCTTTTGCTGGACTCGGCCTGCCTTATGGAGACATACCATCAGCTGGATGTCTTACAGGAATTGGTAAAATTAATGGACTTTGGTGCATGTTCAGCGCGAATGACGCCACGGTGAAAGGTGGTACAGCGTATCCCATCACTGTCAAAAAACAGCTCCGGGCACAAATTGTGGCTATGCAGAATCGCTTGCCTTTCGTTTACTTGGTGGACAGTGGTGGAGCATTTTTACCTCTTCAGTCAGAGATCTTTCCTGATAAAAACCATGGAGGACGCACCTTTTACAATGAAGCAATTATGTCTGCGATGAAGATTCCTCAGGTGGCAGTGGTGTGTGGGTCGTGTACAGCTGGTGGCGCTTATGTACCCACTATGTCTGAGGAGGCGGTGATCGTACACAGGATAGGAACTATATTTTTGGGAGGTCCACCGCTGGTCAAGGCTGCCACCGGGGAGGAGGTTTCTCCAGAGGACCTAGGAGGAGCCAGACTGCATTCAGAAGTGAGTGGCTGTGTAGACCATTTTGCGGCAGTAGAGTCAGAGGCGTATGAATACACCAGAAACATCATCTCCACCCTCAACTATGAGCTCCCAGAAGAGGACAGCGTTCAGGTCGAGGAGCCTCTGTATAGCACAGAGGAGCTCATGGGTCTTGCACCGCGGAGTTACAATTACAGCTTGGACATCAGACTGATTGTGAGTCGACTGACTGATGGAAGTCGATTTCAGGAGTTCAAGGCCCGTTATGGGACCACCCTCCTCACTGGGTTCGCCAGAATTGATGGACATCAAATTGGAATTGTGGCAAATAACGGAGAGCTGACATACGAAGCTTCCCTGAAAGGCAGCCATTTTGTTCAGCTGTGCGACCAGAGAGACATTCCTCTCATCTTCCTGCAAAACACGGCCCCAGAACCTGCACACACAACCTCCCAAACCAAGGCTGAGTCCAACACTAACAGACTGAAGGCTCAGGGGTCTATGATGTCTGCTGTGGCTTGCGCTTCTGTTCCCAAAATGACTGTGGTTATTGGAGGATGCCATGGAGGTGACAGCTATGCTATGTGCGGAAGGGCTTTTGACCCCAATTTCCTGTTCTTGTGGCCCAATGCAAGAGTGTCGATTTTGGCCCCGGGCTACTCTGAGGAATTTGTGCAAACTGAAGAGGAAATCACACAGATCAATGAGATGTTGGAGGAAGAAAGTTCAGCCTTCTTTTCCACTGGCAGACTGTGGGATGATGGCGTTATTCTACCTCAAGACACTAGAAAGatTTTAAGCAAGTGTCTGGAAATCATTAAGCAACAAGAGTATCAACTATCCAGAGAGAAAGTGAGGTCTCCTCTTCTCAGACTCTAACACTACATTTGCAGAAGCCTTAATGGATGAGCTTGTTTAAGgtgttttattcaaataataaactaataactaatagcacatatctttattttaataaaaaatctgcTTGTAATTGCCAACAGTGCCTTATGATTGATACATATGGCTGATGTAAACTAAATTGTACATATAGTGTACTTGTTAATAAACAATTGttcataaatgaattaaaaagtt
>TCONS_00069690
ATTCAATAACTTTAGAGCTGTGCCTGTTGTCTCATCATGCACTGTTGTTTATTACGATCTTTCAACATAAATGGGAATAAACTCAATCATCATCTCGCCAGAGCGTCATTCTCTCAAAATCCACAGTCATGGCATCCATCAGCAAAGTTTGCCAGCAGCTCTGCACACCCCTGCACACATACAGACTGAAGGCTCAGGGGTCTATGATGTCTGCTGTGGCTTGCGCTTCTGTTCCCAAAATGACTGTGGTTATTGGAGGATGCCATGGAGGTGACAGCTATGCTATGTGCGGAAGGGCTTTTGACCCCAATTTCCTGTTCTTGTGGCCCAATGCAAGAGTGTCGATTTTGGCCCCGGGCTACTCTGAGGAATTTGTGCAAACTGAAGAGGAAATCACACAGATCAATGAGATGTTGGAGGAAGAAAGTTCAGCCTTCTTTTCCACTGGCAGACTGTGGGATGATGGCGTTATTCTACCTCAAGACACTAGAAAGatTTTAAGCAAGTGTCTGGAAATCATTAAGCAACAAGAGTATCAACTATCCAGAGAGAAAGTGAGGTCTCCTCTTCTCAGACTCTAACACTACATTTGCAGAAGCCTTAATGGATGAGCTTGTTTAAGgtgttttattcaaataataaactaataactaatagcacatatctttattttaataaaaaatctgcTTGTAATTGCCAACAGTGCCTTATGATTGATACATATGGCTGATGTAAACTAAATTGTACA
>TCONS_00069691
GTCTCATCATGCACTGTTGTTTATTACGATCTTTCAACATAAATGGGAATAAACTCAATCATCATCTCGCCAGAGCGTCATTCTCTCAAAATCCACAGTCATGGCATCCATCAGCAAAGTTTGCCAGCAGCTCTGCACACCCCTGCACACATACAGGTGGCTGGTGGCGACCCATCACACAGctgccatcatcatcatcaaagcGCTGTATGAGCTCTAGGAGACGCCTGCCAAGTGCATTTCCAGTTCTAGATGGAGCATTTCTTCCTGCTGTCAGACACGTGTATGAAGCCAATCTAAGGAACAGCCTCGTCTGTCAGCAGAAGTAAGCCTGACTCTCATACATTTAGATTTAcactatatatgtttttaaatcagaaaaccgGTCTTTCATCAGATACTTCGAGCACAAGGAGAAGGTGATGAAGGGTGGTGGTGAAAACGCTATAGCGCGGCACACACAGAGGAATCAAAAGGTTCTGGTACGAGAACGACTACGCATGTTGCTGGATGATGAAGATTATCTAGAGCTCTCGCCTTTTGCTGGACTCGGCCTGCCTTATGGAGACATACCATCAGCTGGATGTCTTACAGGAATTGGTAAAATTAATGGACTTTGGTGCATGTTCAGCGCGAATGACGCCACGGTGAAAGGTGGTACAGCGTATCCCATCACTGTCAAAAAACAGCTCCGGGCACAAATTGTGGCTATGCAGAATCGCTTGCCTTTCGTTTACTTGGTGGACAGTGGTGGAGCATTTTTACCTCTTCA
>TCONS_00069692
TCAGAGATCTTTCCTGATAAAAACCATGGAGGACGCACCTTTTACAATGAAGCAATTATGTCTGCGATGAAGATTCCTCAGGTGGCAGTGGTGTGTGGGTCGTGTACAGCTGGTGGCGCTTATGTACCCACTATGTCTGAGGAGGCGGTGATCGTACACAGGATAGGAACTATATTTTTGGGAGGTCCACCGCTGGTCAAGGCTGCCACCGGGGAGGAGGTTTCTCCAGAGGACCTAGGAGGAGCCAGACTGCATTCAGAGTATTTGTTTGCATTTCCTGACTGTGTCTTTGTAACTATAATCCCATAACCATGTTTTTAATCAAGGAATATTGATCAATATGTGGCAGTTAACACTGGCTGAATTCTTTCTTGCTTTGCTTTGTTGATTGTCAGTTTTCTAGTATATTTAAAGCAAGAGCAAAATAGTTTATAATGATA
>TCONS_00069693
TCTTCAGATCATATTAACAGGCATTGAGGTAGAAGCAAATCATTTAGGCAGATTCACTTCAATATAATTTGTTAATAGGCTAACCATAAAGCTTTAAGTTCTGAAACTTgctggatgtttttattttaggatGACCTTTTATATGTCAAAACATcaagaaaatgtttttaattctGATAAACTAAAATGTGATTTGTATATGTATGAAGTAGAAGATAAAGCTTGTTAGCTTATTATTTTGCCTATATCATATTAAAAGAAACTATGTTGCTCACCACACAGGATTGTGATACTGTTTGCGCATGTTTACTGAAGCTTTGAATTCAGAAAACACCAAATCATTGAACTACAACTGAATCTGCAACCATAGCTGGCTAATAATCATACTTTTGACATGCTTGTCTGATCATTTGATAGAAGATATTAGCAGTGGCAAACCCTTCCTTCACCctgattttcatttaaatatgattttatttctCCTCATCATTCCTCAGACATCAAATTGGAATTGTGGCAAATAACGGAGAGCTGACATACGAAGCTTCCCTGAAAGGCAGCCATTTTGTTCAGCTGTGCGACCAGAGAGACATTCCTCTCATCTTCCTGCAAAACACGGCCCCAGAACCTGCACACACAACCTCCCAAACCAAGGCTGAGTCCAACACTAACAGACTGAAGGCTCAGGGGTCTATGATGTCTGCTGTGGCTTGCGCTTCTGTTCCCAAAATGACTGTGGTTATTGGAGGATGCCATGGAGGTGACAGCTATGCTATGTGCGGAAGGGCTTTTGACCCCAATTTCCTGTTCTTGTGGCCCAATGCAAGAGTGTCGATTTTGGCCCCGGGCTACTCTGAGGAATTTGTGCAAACTGAAGAGGAAATCACACAGATCAATGAGATGTTGGAGGAAGAAAGTTCAGCCTTCTTTTCCACTGGCAGACTGTGGGATGATGGCGTTATTCTACCTCAAGACACTAGAAAGatTTTAAGCAAGTGTCTGGAAATCATTAAGCAACAAGAGTATCAACTATCCAGAGAGAAAGTGAGGTCTCCTCTTCTCAGACTCTAACACTACATTTGCAGAAGCCTTAATGGATGAGCTTGTTTAAGgtgttttattcaaataataaactaataactaatagcacatatctttattttaataaaaaatctgcTTGTAATTGCCAACAGTGCCTTATGATTGATACATATGGCTGATGTAAACTAAATTGTACATATAGTGTACTTGTTAATAAACAATTGttca

Function

symbol description
si:ch211-198n5.11 Predicted to enable ligase activity. Predicted to contribute to methylcrotonoyl-CoA carboxylase activity. Predicted to be involved in leucine catabolic process. Predicted to be part of methylcrotonoyl-CoA carboxylase complex. Predicted to be active in mitochondrion. Is expressed in myotome.

GO:

id name namespace
GO:0006552 leucine catabolic process biological_process
GO:1905202 methylcrotonoyl-CoA carboxylase complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0004485 methylcrotonoyl-CoA carboxylase activity molecular_function
GO:0016874 ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050411-52 Predicted to enable ligase activity. Predicted to contribute to methylcrotonoyl-CoA carboxylase activity. Predicted to be involved in leucine catabolic process. Predicted to be part of methylcrotonoyl-CoA carboxylase complex. Predicted to be active in mitochondrion. Is expressed in myotome.

Ensembl:

ensembl_id ENSDARG00000054400

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069689 False 2107 mRNA 0.46 13 16676894 16688511
TCONS_00069690 False 748 nonsense_mediated_decay 0.41 6 16676937 16688462
TCONS_00069691 False 772 lncRNA 0.47 3 16676965 16681472
TCONS_00069692 False 440 lncRNA 0.43 2 16682253 16683167
TCONS_00069693 True 1269 lncRNA 0.38 5 16684915 16688493

Neighbor

gene id symbol gene type direction distance location
XLOC_035531 NA coding upstream 63423 16609678 ~ 16613471 (+)
XLOC_035529 NA coding upstream 94852 16563953 ~ 16582042 (+)
XLOC_035530 NA coding upstream 99085 16570336 ~ 16577809 (+)
XLOC_035528 cdkn2c coding upstream 262008 16407884 ~ 16414886 (+)
XLOC_035527 NA coding upstream 411083 16259586 ~ 16265811 (+)
XLOC_035533 NA coding downstream 30596 16719107 ~ 16721376 (+)
XLOC_035534 smim15 coding downstream 37875 16726386 ~ 16730368 (+)
XLOC_035535 ercc8 coding downstream 49771 16738282 ~ 16757285 (+)
XLOC_035536 elovl7a coding downstream 69793 16758304 ~ 16769798 (+)
XLOC_035537 CR925863.1 coding downstream 83663 16772174 ~ 16810253 (+)
XLOC_035525 BX510319.1 non-coding upstream 1197087 15476625 ~ 15479807 (+)
XLOC_035539 NA non-coding downstream 367368 17055879 ~ 17059377 (+)
XLOC_035542 NA non-coding downstream 398480 17086991 ~ 17126339 (+)
XLOC_035546 NA non-coding downstream 679530 17368041 ~ 17407080 (+)

Expression


Co-expression Network