XLOC_035557 (alkal1)


Basic Information

Item Value
gene id XLOC_035557
gene name alkal1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 18460807 ~ 18488221 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069729
AATTACGGTGATCAGCTTCATTCTCGGATAGACATTCTGTCTGGAAAGCCATGCGGGCTGAGAAGAGATGGCACATCTTGTTGAGTATGATTCTTTTGCTCATCACCTCCAGCCAGTGCATGGACAGCAAGGAGGTAAAGGAGTCGGAAAGGAAAACTCTGCTTAATCTAATCCTGCAAGTGATCGGGGAAAAGCCCGCGTCCAGACGCGTCACCAGTGGCCTCTACTCTGTATCTCAAGATGCTAAGTTTTCCTCGCGTGAAAACACTGCACATTTGCCCAAGCCGGACAACAGCAGACCAATAGAGATTGTCCCAAGAGACACAAGCATGAAAGACAAATTTATAGAGCATTTTAcagCAGGGCCAGTCAAGTTTCCATCTGAATGCAGGAcacatttccacagaatttatcACAACACAAGGGATTGTTCCAGACCGACATATTATAAAAGATGTGCAAGATTGCTAACAAGGCTAGCGATGAGTCCCCTTTGCACACAATCATAGAAAACGCATGTCCTGAGGATATAAAAGAAGAAGCTCTGAGGATTTTGGAGTACATTATTTTTTTCCAAGGAAGTGCCTTCAAACCACTGCAATTAACTGTCATTGTTTTCATTTACTGTCATTTCCATTTCCAACGAAAGATTGTTCTGAATgaatacaaaatataattttttgcttATCATAATTTATATGTTTGTGTTATGATGctattaaaatatagttttgtttaaTAGCTTTGCTTTTGATATTATGAGTTTTAAAGAAAGTATTATTTATCGTTGCTgccagttatttatttaaatgatgtgta
>TCONS_00069730
GAAGCTTCGCACTTGACGTATAAAAACAAGACGCATGTTCTCAAGAAAGACACGAGACAACAGGAACTTTTGGAAGATATATTTTTCTCTGGCAACTTTGCGTCCACATCATTAGAGGCAGAAGCACCTACCAATATATAATCGTTCTGGAAAGCCATGCGGGCTGAGAAGAGATGGCACATCTTGTTGAGTATGATTCTTTTGCTCATCACCTCCAGCCAGTGCATGGACAGCAAGGAGGTAAAGGAGTCGGAAAGGAAAACTCTGCTTAATCTAATCCTGCAAGTGATCGGGGAAAAGCCCGCGTCCAGACGCGTCACCAGTGGCCTCTACTCTGTATCTCAAGATGCTAAGTTTTCCTCGCGTGAAAACACTGCACATTTGCCCAAGCCGGACAACAGCAGACCAATAGAGATTGTCCCAAGAGACACAAGCATGAAAGACAAATTTATAGAGCATTTTAcagCAGGGCCAGTCAAGTTTCCATCTGAATGCAGGAcacatttccacagaatttatcACAACACAAGGGATTGTTCCAGACCGACATATTATAAAAGATGTGCAAGATTGCTAACAAGGCTAGCGATGAGTCCCCTTTGCACACAATCATAGAAAACGCATGTCCTGAGGATATAAAAGAAGAAGCTCTGAGGATTTTGGAGTACATTATTTTTTTCCAAGGAAGTGCCTTCAAACCACTGCAATTAACTGTCATTGTTTTCATTTACTGTCATTTCCATTTCCAACGAAAG
>TCONS_00069731
ATGCGACGATTTAATGACTTGCTTTCCTGTTTTGTTCGTTTGTCAGTCTGGAAAGCCATGCGGGCTGAGAAGAGATGGCACATCTTGTTGAGTATGATTCTTTTGCTCATCACCTCCAGCCAGTGCATGGACAGCAAGGAGGTAAAGGAGTCGGAAAGGAAAACTCTGCTTAATCTAATCCTGCAAGTGATCGGGGAAAAGCCCGCGTCCAGACGCGTCACCAGTGGCCTCTACTCTGTATCTCAAGATGCTAAGTTTTCCTCGCGTGAAAACACTGCACATTTGCCCAAGCCGGACAACAGCAGACCAATAGAGATTGTCCCAAGAGACACAAGCATGAAAGACAAATTTATAGAGCATTTTAcagGGCCAGTCAAGTTTCCATCTGAATGCAGGAcacatttccacagaatttatcACAACACAAGGGATTGTTCCAGACCGACATATTATAAAAGATGTGCAAGATTGCTAACAAGGCTAGCGATGAGTCCCCTTTGCACACAATCATAGAAAACGCATGTCCTGAGGATATAAAAGAAGAAGCTCTGAGGATTTTGGAGTACATTATTTTTTTCCAAGGAAGTGCCTTCAAACCACTGCAATTAACTGTCATTGTTTTCATTTACTGTCATTTCCATTTCCAACGAAAGATTGTTCTGAATgaatacaaaatataattttttgcttATCATAATTTATATGTTTGTGTTATGATGctattaaaatatagttttgtttaaTAGCTTTGCTTTTGATATTATGAGTTTTAAAGAAAGTATTATTTATCGTTGCTgccagttatttatttaaatgatgtgtaaaTATTCTGTCCTGATTACCAGAGAGGATATTGGAATATGTATCTCATTAAAACCGTCATTACTATTAAATATATTTCTGTTTTGTATTgacatgtattattttaaatgcaaatctaAATATATGTCATTTCaactagggttgggtcgatagacgatgctatcgtccatcgccgatgacTAATAGACATCACAATACTGAGATGGCATCCCGATCCTCTGTACCGCCCCTCTCGCAAACTTTCCCgagaaaaatacacacttaggccctgtttagactaatacgtcttagttttaaaatggcatttcagaatgaaaaagATCCATGCCCGCACTGGTGTTTTATCTAGGTTTTCTGAAAATCCCTCCTTCCATACTATAAcactaaaaaaatgcacattccGTGATCACACAGAGACAGATACTGTCATGTGCTCGTCTGAGctcaaaaccccagagagcagtgcacgtcgaacAGTTTATCAATGATGTATTGTAggattgcgtctcactatagttgttaaacgtgttattttattaatcttgtctctatctaacgactcttctgtcttttgaatgcatcaggtaacgtgtcacagctgAAAGTACGTCGCTTTAATcattcgctttcacgcttgtacttagtcattttagtgaaaacctcagctactgttggctggtttctgttggttgtgcaacttttttaccaaccaagtttgtcgacaccattgtaacaacacagatcactgtgtcccgcggaaaaagtgattgacagaagaaatttgtgtgtaactcatgtttatttatttataatttggttatggataggcccacacggaatctatGCGTGCAGATATCCGTagattttttgcccatcattgagtctatttatttacttgtgtaaatgtgtgtaaatttctatttattacattttttttattaatttcagtaatttcattgactaatatgaaaaattttatatgatttttttacagttaatacagtttgtaaagtaatattttctgtcttttatgatatatattacattacagacttgctttgtttagcaatgtataagtggatctaattggatttgcattgaaaacattaaataacagttaaaaagttattatttttaatttcatgtatTTAGTTAATAACGATACTCCCGAAATTATTCTACACAAATCGGAAGATCATCtacaaaattctaaataaaaatagcaaaaaaaattacgcagattctgtgtggccctagttatgggtaaaacaaagaccatccgggtcaggtagttgaaacgattagctacaaataattaattcattatgaatgaattaattattcataaattattaATTCACCGCCATctacgacgacgatgccatcgtccatcacgatGTTTCACATTGGACATTGTACGATGGCAAATTGGTCgtcatcgcccaaccctaatttcAGTCATCCATACTCTTTACGAAATGATGAACGTTTCATACCATGCTGTCATTTCCACGATATCCACCATTGGCACTTAAAGAACTTCAAACGATaaattatttcaatgacaaaaacACATTGTTTGTTTGATAACAATGgtaatattgcactgatgctttgaAAGAATAAAATCATTCAAGCACActtattgcttttgttttttattcagatGTT

Function

symbol description
alkal1 Predicted to enable receptor signaling protein tyrosine kinase activator activity and receptor tyrosine kinase binding activity. Acts upstream of or within iridophore differentiation. Predicted to be located in extracellular region. Orthologous to human ALKAL1 (ALK and LTK ligand 1).

GO:

id name namespace
GO:0050935 iridophore differentiation biological_process
GO:0070374 positive regulation of ERK1 and ERK2 cascade biological_process
GO:0070378 positive regulation of ERK5 cascade biological_process
GO:0030971 receptor tyrosine kinase binding molecular_function
GO:0030298 receptor signaling protein tyrosine kinase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-243 Predicted to enable receptor signaling protein tyrosine kinase activator activity and receptor tyrosine kinase binding activity. Acts upstream of or within iridophore differentiation. Predicted to be located in extracellular region. Orthologous to human ALKAL1 (ALK and LTK ligand 1).

Ensembl:

ensembl_id ENSDARG00000074387

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069729 False 819 mRNA 0.39 6 18460807 18486551
TCONS_00069730 False 755 mRNA 0.43 6 18463797 18486381
TCONS_00069731 True 2493 mRNA 0.35 5 18464235 18488221

Neighbor

gene id symbol gene type direction distance location
XLOC_035556 NA coding upstream 48779 18410984 ~ 18412028 (+)
XLOC_035555 glis1b coding upstream 295130 18044257 ~ 18165677 (+)
XLOC_035554 ssbp3b coding upstream 424168 18010568 ~ 18036639 (+)
XLOC_035553 si:dkey-267j14.7 coding upstream 468207 17990195 ~ 17992600 (+)
XLOC_035552 lrriq3 coding upstream 470230 17987215 ~ 17990577 (+)
XLOC_035558 tab3 coding downstream 56964 18545185 ~ 18562979 (+)
XLOC_035559 prrg1 coding downstream 100330 18588551 ~ 18601241 (+)
XLOC_035560 ccdc181 coding downstream 127717 18615938 ~ 18623104 (+)
XLOC_035561 fsd1 coding downstream 136437 18624658 ~ 18647363 (+)
XLOC_035562 BX247907.1 coding downstream 182016 18670237 ~ 18670362 (+)
XLOC_035551 NA non-coding upstream 492573 17962829 ~ 17968234 (+)
XLOC_035546 NA non-coding upstream 1053727 17368041 ~ 17407080 (+)
XLOC_035542 NA non-coding upstream 1334468 17086991 ~ 17126339 (+)
XLOC_035539 NA non-coding upstream 1401430 17055879 ~ 17059377 (+)
XLOC_035563 NA non-coding downstream 221753 18709974 ~ 18733594 (+)
XLOC_035565 CR376858.1 non-coding downstream 535040 19023261 ~ 19023377 (+)
XLOC_035566 NA non-coding downstream 739614 19227835 ~ 19232675 (+)
XLOC_035573 NA non-coding downstream 1175233 19663454 ~ 19715690 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_03617450_03619486 NA coding CI01000010 null 3617343 ~ 3619486 (-)