RNA id: TCONS_00069729


Basic Information

Item Value
RNA id TCONS_00069729
length 819
RNA type mRNA
GC content 0.39
exon number 6
gene id XLOC_035557
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 18460807 ~ 18488221 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATTACGGTGATCAGCTTCATTCTCGGATAGACATTCTGTCTGGAAAGCCATGCGGGCTGAGAAGAGATGGCACATCTTGTTGAGTATGATTCTTTTGCTCATCACCTCCAGCCAGTGCATGGACAGCAAGGAGGTAAAGGAGTCGGAAAGGAAAACTCTGCTTAATCTAATCCTGCAAGTGATCGGGGAAAAGCCCGCGTCCAGACGCGTCACCAGTGGCCTCTACTCTGTATCTCAAGATGCTAAGTTTTCCTCGCGTGAAAACACTGCACATTTGCCCAAGCCGGACAACAGCAGACCAATAGAGATTGTCCCAAGAGACACAAGCATGAAAGACAAATTTATAGAGCATTTTAcagCAGGGCCAGTCAAGTTTCCATCTGAATGCAGGAcacatttccacagaatttatcACAACACAAGGGATTGTTCCAGACCGACATATTATAAAAGATGTGCAAGATTGCTAACAAGGCTAGCGATGAGTCCCCTTTGCACACAATCATAGAAAACGCATGTCCTGAGGATATAAAAGAAGAAGCTCTGAGGATTTTGGAGTACATTATTTTTTTCCAAGGAAGTGCCTTCAAACCACTGCAATTAACTGTCATTGTTTTCATTTACTGTCATTTCCATTTCCAACGAAAGATTGTTCTGAATgaatacaaaatataattttttgcttATCATAATTTATATGTTTGTGTTATGATGctattaaaatatagttttgtttaaTAGCTTTGCTTTTGATATTATGAGTTTTAAAGAAAGTATTATTTATCGTTGCTgccagttatttatttaaatgatgtgta

Function

GO:

id name namespace
GO:0050935 iridophore differentiation biological_process
GO:0070374 positive regulation of ERK1 and ERK2 cascade biological_process
GO:0070378 positive regulation of ERK5 cascade biological_process
GO:0030971 receptor tyrosine kinase binding molecular_function
GO:0030298 receptor signaling protein tyrosine kinase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-243 Predicted to enable receptor signaling protein tyrosine kinase activator activity and receptor tyrosine kinase binding activity. Acts upstream of or within iridophore differentiation. Predicted to be located in extracellular region. Orthologous to human ALKAL1 (ALK and LTK ligand 1).

Ensembl:

ensembl_id ENSDART00000149860

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071922 lncRNA upstream 48779 18410984 ~ 18412028 (+) True XLOC_035556
TCONS_00072175 lncRNA upstream 492573 17962829 ~ 17968234 (+) True XLOC_035551
TCONS_00072174 lncRNA upstream 1053727 17368041 ~ 17407080 (+) True XLOC_035546
TCONS_00072173 lncRNA upstream 1334468 17087009 ~ 17126339 (+) False XLOC_035542
TCONS_00072172 lncRNA upstream 1363354 17086991 ~ 17097453 (+) False XLOC_035542
TCONS_00071923 lncRNA downstream 223423 18709974 ~ 18733594 (+) True XLOC_035563
TCONS_00072176 lncRNA downstream 741284 19227835 ~ 19232675 (+) True XLOC_035566
TCONS_00069750 lncRNA downstream 1027806 19514357 ~ 19516262 (+) False XLOC_035570
TCONS_00069751 lncRNA downstream 1030052 19516603 ~ 19520119 (+) True XLOC_035570
TCONS_00072177 lncRNA downstream 1176903 19663454 ~ 19715690 (+) False XLOC_035573
TCONS_00069727 mRNA upstream 295130 18044257 ~ 18165677 (+) False XLOC_035555
TCONS_00069728 mRNA upstream 309888 18101608 ~ 18150919 (+) True XLOC_035555
TCONS_00069724 mRNA upstream 424168 18010978 ~ 18036639 (+) False XLOC_035554
TCONS_00069723 mRNA upstream 424194 18010568 ~ 18036613 (+) False XLOC_035554
TCONS_00069725 mRNA upstream 429211 18010982 ~ 18031596 (+) False XLOC_035554
TCONS_00069732 mRNA downstream 58634 18545185 ~ 18562258 (+) False XLOC_035558
TCONS_00069733 mRNA downstream 58988 18545539 ~ 18562979 (+) False XLOC_035558
TCONS_00069734 mRNA downstream 59382 18545933 ~ 18555022 (+) False XLOC_035558
TCONS_00069735 mRNA downstream 69008 18555559 ~ 18562634 (+) True XLOC_035558
TCONS_00069736 mRNA downstream 102000 18588551 ~ 18601241 (+) False XLOC_035559
TCONS_00069707 other upstream 1363742 17087060 ~ 17097065 (+) True XLOC_035542
TCONS_00069704 other upstream 1387436 17069577 ~ 17073371 (+) False XLOC_035540
TCONS_00069701 other upstream 1650554 16772174 ~ 16810253 (+) True XLOC_035537
TCONS_00069690 other upstream 1772345 16676937 ~ 16688462 (+) False XLOC_035532
TCONS_00069685 other upstream 2381014 16023470 ~ 16079793 (+) False XLOC_035526
TCONS_00069740 other downstream 183686 18670237 ~ 18670362 (+) True XLOC_035562
TCONS_00069742 other downstream 536710 19023261 ~ 19023377 (+) True XLOC_035565
TCONS_00069748 other downstream 1017476 19504027 ~ 19509241 (+) True XLOC_035569
TCONS_00069759 other downstream 1465182 19951733 ~ 19952380 (+) False XLOC_035578
TCONS_00069760 other downstream 1465226 19951777 ~ 19952379 (+) True XLOC_035578

Expression Profile

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