RNA id: TCONS_00072177


Basic Information

Item Value
RNA id TCONS_00072177
length 1646
lncRNA type read_through
GC content 0.44
exon number 5
gene id XLOC_035573
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 19663454 ~ 19715690 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgtgtgtgtgtgtgtgtgtgtgagaaccaTGTTGGAGCGCTTTAGCGAAGCAGCGTAGCGTGCAGTACAGGAGTGATGTGGGCTGAGCCGACCTGACCGAGCCCCGGCCCTCCGCTAATCCTGCCGTTTTCAGGAGCCCTGGCCCGTACTTGATGAGCTTGGCCGACAGGTATGAGCCCATCGTGTGCAACATGCAATCACTAAAATACTTTCCCCGCATCACCAAACAGCACAGGAGCCGTGGAGCACCACTATTACTACAGCAACTCAATTTCGCACAACCAAAGGAGAGAGGAGGTGGAGACTACTTATCACTCCTACAGAGAGTTTCTAAGATTGATGGGCAGCAGTGGCAGGAAACGAGCtgggaaagaaaaagaaaaaaactctgaAGCAGTATCACAGGTCAGAAGCGCTGAACCGGAATCTGCTTTGAGAAGCAGCAGGATGAAAAGGAATCGGATCCCAGAAGAGTCCTTCTGTTTTAAGCTGGGTTATGAACACTGGTCCAGATGGCAGGCAACGGTGCCGCTTGAAGACTAATATTTTTGCAGAGGAGGCTGCAGTGAGTGGGCCGAGCCGAAGGAAGCAGCCCGACTGAGCTCCACAGGAGGCTGTGCTCAGGAAACCCAAACCCTCAGTGACCCCTGACCTCTGCTACTGCTGCAACATCTGCACCAGAGAGAccaaaatgaagaaaaaagatGAGGAACAGACATTGAGGTACAGTGAGGATGAGGAGTAAAAATGTCAAGTGTACAGTACGCAGAGAACGAGAGAAGCGGTAAAAGGAAATGCTCTGCTGTTGTCCAGAATTGTCCATCAGATGAGCTGCTATGGTTTGGTTTGAGTGGTCAGACTGTGAGAGATGGTAATCTGGACTATTACTGTAATCCTCTGTCAGCAGTGGTAGAAGCGGCTGGAAACAAGCTCTCTCCGACCATCAGACTCGCTCGCTGAGGGTTTGCAGGCAGCAGTTTCAACTTTCTTCCCTTAAGCATGAATGAAATTGTGAAGCCTTTGGATCTGacattatactgtatgtattgGGGAGACCAAGGCTAGTGGACAAGTGATTCTTTATTTGTTATTTCAGCGATGTATTCCTtaaagtgtttgtttatttgactttCAAACTGTTTACAACCAATATAAACGTCCCGTGAAGTCCTTTGAAAtgtgcactttttattttattatttggcgtaatctcaactgaaagcTGTAAAAATGGTGGGACATGTAGTaggtcctttttaaaaaaaaacaacagccaatagtgttttgtttttatcacagctcttccAGTGAGTGGTGGAGTTCAAACTCATCAAATGagaagcaaatgagaagcatcttgaagggggtggggaATGTCAGATAGCAGAGAGCGtatgattggtcaagatttgattagaaactgaagtatgaggtgatctGAAAGatggcggaagtgacaaactgcacactaaaaacaaaatttgtcactgttttggagcacattagctaatagatatccttGAAACGTACACACTGAAAATAACATctggaattttttattttaatttcacaagacCTTTAAATTAGTAATAGTCATCctttttttgcaataacttttAGATaagaaataaactaaacaaaaaaat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00069751 lncRNA upstream 143335 19516603 ~ 19520119 (+) True XLOC_035570
TCONS_00069750 lncRNA upstream 147192 19514357 ~ 19516262 (+) False XLOC_035570
TCONS_00072176 lncRNA upstream 430779 19227835 ~ 19232675 (+) True XLOC_035566
TCONS_00071923 lncRNA upstream 929860 18709974 ~ 18733594 (+) True XLOC_035563
TCONS_00071922 lncRNA upstream 1251426 18410984 ~ 18412028 (+) True XLOC_035556
TCONS_00072183 lncRNA downstream 23313 19739003 ~ 19803379 (+) False XLOC_035577
TCONS_00069758 lncRNA downstream 23313 19739003 ~ 19803379 (+) False XLOC_035577
TCONS_00072184 lncRNA downstream 23313 19739003 ~ 19950333 (+) False XLOC_035577
TCONS_00072186 lncRNA downstream 23417 19739107 ~ 19803379 (+) False XLOC_035577
TCONS_00072185 lncRNA downstream 23417 19739107 ~ 19803379 (+) False XLOC_035577
TCONS_00069753 mRNA upstream 25092 19621511 ~ 19638362 (+) False XLOC_035572
TCONS_00069754 mRNA upstream 25092 19621731 ~ 19638362 (+) False XLOC_035572
TCONS_00069755 mRNA upstream 25092 19624589 ~ 19638362 (+) True XLOC_035572
TCONS_00069752 mRNA upstream 43662 19548985 ~ 19619792 (+) True XLOC_035571
TCONS_00069749 mRNA upstream 143113 19514294 ~ 19520341 (+) False XLOC_035570
TCONS_00069765 mRNA downstream 262022 19977712 ~ 19997768 (+) False XLOC_035581
TCONS_00069768 mRNA downstream 321678 20037368 ~ 20072655 (+) False XLOC_035582
TCONS_00069769 mRNA downstream 321705 20037395 ~ 20072776 (+) True XLOC_035582
TCONS_00069770 mRNA downstream 424631 20140321 ~ 20190412 (+) False XLOC_035583
TCONS_00069771 mRNA downstream 442108 20157798 ~ 20192151 (+) True XLOC_035583
TCONS_00069748 other upstream 154213 19504027 ~ 19509241 (+) True XLOC_035569
TCONS_00069742 other upstream 640077 19023261 ~ 19023377 (+) True XLOC_035565
TCONS_00069740 other upstream 993092 18670237 ~ 18670362 (+) True XLOC_035562
TCONS_00069707 other upstream 2566389 17087060 ~ 17097065 (+) True XLOC_035542
TCONS_00069704 other upstream 2590083 17069577 ~ 17073371 (+) False XLOC_035540
TCONS_00069759 other downstream 236043 19951733 ~ 19952380 (+) False XLOC_035578
TCONS_00069760 other downstream 236087 19951777 ~ 19952379 (+) True XLOC_035578
TCONS_00069761 other downstream 242795 19958485 ~ 19959118 (+) False XLOC_035579
TCONS_00069762 other downstream 242822 19958512 ~ 19959117 (+) True XLOC_035579
TCONS_00069763 other downstream 249533 19965223 ~ 19965872 (+) False XLOC_035580

Expression Profile

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