RNA id: TCONS_00072184



Basic Information


Item Value
RNA id TCONS_00072184
length 1079
lncRNA type read_through
GC content 0.47
exon number 7
gene id XLOC_035577
representative False

Chromosome Information


Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 19739003 ~ 19950333 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CACATATCCAAGCaaattcataaatgcaaaaaaatctgaCTCTCCAGACTCCTAAAAATATCAGGATTTAAAGTGTTGGAGAAGTGGGTGAGTGCAGACGCTCTGAGTTTTCTTTGTGGCCTAGGTGTGTTTGAATCGGGCAGTGCTCTGGACAGCTTTGTTCCTCTGCTGTCCCCAGTGGTCCTGGCAGGCGCACAGGAAGACGCGTGTCAAACACTGAGACAAGGGAGCTCTCTCTGCAAAGCCCACACAGAGAGAGAAGAAAGCTAGAATTAATGCTGTAAGAATAAACACCGAAAAGAAACACAGGAGAGGCGGTTAGTTAAATAACAGAGGGGGGAGAAAAGCCGCTCTGGGGGAACATTCAAGACATACCCgaattttttaaagcaaagttGCAGCATTGAAAAAAGATGGAGGCCTTTGGAGAGGTGACATTTGGCTGGGCACGACGGCCGAGAATACCAACAAACTAATGGCGCGAGATGACAGAAGCACCTGAATTTGCCCTTTCCTGGATGCTCAGATAGAGGATGAAGCAGGGCCACTGTTGACTAAATGGGTGTCAAGAATTGGACAACAGTGTTCTAGTCTCCTCCAAATTTATTAAAGgcgcTGTTGCttctcctatgcaatcctcaaagcaAGACTGAGACAAtaagacgctgtttcccaaacagattctgtaaaCGCAATTTGAATCGGAATAGTGATCCAGCCGGCTGGCTTTTGTGTTCGTGAAGGAGAAGAGATCGAGGCACAGAGAGAGCCGACCCGCTGTTGACTGGTGCCATTGTTTCGGAGCCCTATGAATTCCCCTCCTTCAAAGTACAGACCCCACAGGGTGTGCATTGATGTGTTTAAACACCGGGATCACTGTATGTCCTCAGACAGAAGCACGAACACTTGAAGAGGATGAAGGATTTGCTGTCTCGGTCTACCCTTTGGCAGTTTTCAGGATGCCCTGCTTTGATCTCAACCATAAGTGCTGTGACAACAACCTTGAGATGTAAAGAAAAAAGCCAGTTGATGTTTTTATGACAGACTCATGATAGGTCCGAATAGATCCCCACAGTGGC

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00072178 lncRNA upstream 23313 19663460 ~ 19715690 (+) False XLOC_035573
TCONS_00069767 lncRNA downstream 46876 19997209 ~ 19998268 (+) True XLOC_035581
TCONS_00072190 lncRNA downstream 243859 20194192 ~ 20196205 (+) True XLOC_035584
TCONS_00069772 lncRNA downstream 279372 20229705 ~ 20240869 (+) True XLOC_035585
TCONS_00069779 lncRNA downstream 488600 20438933 ~ 20440695 (+) False XLOC_035588
TCONS_00071924 lncRNA downstream 635658 20585991 ~ 20590845 (+) True XLOC_035593
TCONS_00069757 mRNA upstream 62363 19674369 ~ 19676640 (+) True XLOC_035575
TCONS_00069756 mRNA upstream 68698 19668654 ~ 19670305 (+) True XLOC_035574
TCONS_00069753 mRNA upstream 100641 19621511 ~ 19638362 (+) False XLOC_035572
TCONS_00069765 mRNA downstream 27379 19977712 ~ 19997768 (+) False XLOC_035581
TCONS_00069768 mRNA downstream 87035 20037368 ~ 20072655 (+) False XLOC_035582
TCONS_00069769 mRNA downstream 87062 20037395 ~ 20072776 (+) True XLOC_035582
TCONS_00069770 mRNA downstream 189988 20140321 ~ 20190412 (+) False XLOC_035583
TCONS_00069771 mRNA downstream 207465 20157798 ~ 20192151 (+) True XLOC_035583
TCONS_00069748 other upstream 229762 19504027 ~ 19509241 (+) True XLOC_035569
TCONS_00069742 other upstream 715626 19023261 ~ 19023377 (+) True XLOC_035565
TCONS_00069740 other upstream 1068641 18670237 ~ 18670362 (+) True XLOC_035562
TCONS_00069707 other upstream 2641938 17087060 ~ 17097065 (+) True XLOC_035542
TCONS_00069704 other upstream 2665632 17069577 ~ 17073371 (+) False XLOC_035540
TCONS_00069759 other downstream 1400 19951733 ~ 19952380 (+) False XLOC_035578
TCONS_00069760 other downstream 1444 19951777 ~ 19952379 (+) True XLOC_035578
TCONS_00069761 other downstream 8152 19958485 ~ 19959118 (+) False XLOC_035579
TCONS_00069762 other downstream 8179 19958512 ~ 19959117 (+) True XLOC_035579
TCONS_00069763 other downstream 14890 19965223 ~ 19965872 (+) False XLOC_035580

Expression Profile


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