RNA id: TCONS_00069732


Basic Information

Item Value
RNA id TCONS_00069732
length 2216
RNA type mRNA
GC content 0.52
exon number 6
gene id XLOC_035558
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 18545185 ~ 18562979 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGAGGTACGCCTTAATAAAATACgatttttaaggtattttaataaataccatAAATAATAATAGGTACCGCGGCGCAACCATAAGTTATCTAATCTAGCAACAACCGATATGGAGGCATCCTATTATATTCACTGGATTTCCATAGAGTTAACGAGTTCGCACATATTTGTAATGTTCCacattaataatgacaaaaatatctACTAAATTTGACTGCGATAGTAGTTTTTGTTTGGCAATGTTTTAATTCCCGCCCCAGGTCGACAGAGGGCACGAATGTGCCGTCAATCGCTACTGCAGAAACTTCTAACCGGAACGAGAGAGGAAGAGAAATAGGCGTAAGTGAAGACGACAATTTTGTTGCGACTGTACTAGCCGACGTGTTCCCCGTAGAAACCCGGTGAATTGTTGTCATTTCCGATCACTTCACCCGTCCGGTGACACACCCCCTGTGAAAAGCCTTGCTTGGACGGTCAATGGCCGTGAGGCTCCGGCACACGGGGATGAGAGGAGAGCAGGTGCTGCGCTCCTGGCTGCGGACTCATTGACTCTCTCTTTGGGCTCATGATGGCGCAGGGAGGGCCTCAGTTGGACTATCAAATACTGCAGGACCTCAGGCAGCGCTTCCCAGAGATTCCAGAGACAGTAGTTTCTCAGTACCTTCTTCAGAACAACAATAATGCAGACCTCTGCTACCACCTGCTGGCTCAGGAGAGTAATCGATACCTGTATGAGGAGTACCACAGTCCAGATGACTTGCACTTAAACCGGAACCACATGCTGCGTATCAGTGTAGGCTACCCTGTTCCTGATGGGGTCAAAAATATTCCTGGTGGCCGAGCTTTGGTCCACAGTTCCAGCGACGGGCATATCGAGCATCCTCGAAGTGGCTTCCCCGAGCCTCTCTCTGCTCCCGCTACTGTGGCTCCATCACCCGGATATAACCCCTTCTTTAAAACTGATCAATCACGATCAAACATCCCCACGCCTCCACCTAGCATTCCAGGCATGTCGCCCACTTACCACCCAGTCTCACGTTACATGACTCCTATAACAGTGACCCTCTCCCAAAACATGCCTTCTGCCCCACAAGCTCTGCAAATCCCACCTGGTACCTATTGTACCAGCGGGAACACTGTGTACATGCGTCCATCACCGTCTCAAAGTCCTCAACCCACTCCCTGGTCCACATCTGGAACATCCATGTACCAGCAGTCTCCTTACGCCACCCCAACGTACCAGTCCCCCTACAGCTCTCCCCAACATCAGGTCCAGCAGCCGCCACAGGTGTTTCTACCCATAAGCCCTCCCACCCTTCCGGGGCTGTCCTACCAGCAAACCCCTGTGTCCCAGAGGCCTTTTATATCCTCCAAAGGCCCCATGAAGAACCAGATAGAGATCACATTGGAGGGACAGCGACCAAGGAGCAATTCCCCAGTACACACTCCACAGGGAGCACTCTATATGGCCACCAGCCCTTCCCCGAGCTCCCCATCGCGGGCCATCAGTATGGCAGGACCTCCAGGGGCCTCCATTCATCAAGGAATGTATGCCCACCAGGCTGTGGCGAGACCCCGGCCTACATCCTCTCCTCAGCCTGCCCCCTCCGCCTTCATTAAGATCAAAGTTTCGCCGAGGCAGGTGCAGGGTTCATCAAATTCTCCACCGGTAGAGACAGAATCACTTCTTAACATAGTGGACCAGGGCGAGCGGCATGGTGCCCCTCCTCCGATCCTGCCCATCTCTGCGCTGCCGGGGAGCATCGCCAACCAGATCAACTGCATGCCTAGACGGTCCAGCTCCGGCTCGGATGACTATGCATATACTCAAGCGCTACTCTTGCACCAGCGTGCTCGGATGGAGCGTCTGATGAAAGAACTCATGCTGGAGCGCCAGAAACTGGATCAGTTGAAGGCGGAAGTGAATGAAATGGAATTCGACGCCCTGCAGAGACGCTTCAGACGGGTGAACAGCACCAGCCTGATCCCTCGGCCCGAGGAGATGACCAAAATTCGGTCACAAAACAGACAGCTTCAGATTGACATTGATTGCACCTTGAAGGAGACGGACCTGCTGCAGTCCAGAGCTAAACCTACGGCTGTGCAACGAGACGAGGATTTCGAAGGCGCTCAATGGAACTGTGAAAGCTGCACTTTTCTTAACCACCCTGCTCTGCACCGCTGTGAACAATGCGAGATGCCGCGCAACACTTGA

Function

GO:

id name namespace
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04668 TNF signaling pathway
ko04621 NOD-like receptor signaling pathway
ko04657 IL-17 signaling pathway
ko05130 Pathogenic Escherichia coli infection
ko05132 Salmonella infection
ko05131 Shigellosis

ZFIN:

id description
ZDB-GENE-060503-408 Predicted to enable kinase activity; metal ion binding activity; and ubiquitin binding activity. Predicted to be involved in positive regulation of I-kappaB kinase/NF-kappaB signaling. Predicted to act upstream of or within phosphorylation. Orthologous to human TAB3 (TGF-beta activated kinase 1 (MAP3K7) binding protein 3).

Ensembl:

ensembl_id ENSDART00000191398

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071922 lncRNA upstream 133157 18410984 ~ 18412028 (+) True XLOC_035556
TCONS_00072175 lncRNA upstream 576951 17962829 ~ 17968234 (+) True XLOC_035551
TCONS_00072174 lncRNA upstream 1138105 17368041 ~ 17407080 (+) True XLOC_035546
TCONS_00072173 lncRNA upstream 1418846 17087009 ~ 17126339 (+) False XLOC_035542
TCONS_00072172 lncRNA upstream 1447732 17086991 ~ 17097453 (+) False XLOC_035542
TCONS_00071923 lncRNA downstream 147716 18709974 ~ 18733594 (+) True XLOC_035563
TCONS_00072176 lncRNA downstream 665577 19227835 ~ 19232675 (+) True XLOC_035566
TCONS_00069750 lncRNA downstream 952099 19514357 ~ 19516262 (+) False XLOC_035570
TCONS_00069751 lncRNA downstream 954345 19516603 ~ 19520119 (+) True XLOC_035570
TCONS_00072177 lncRNA downstream 1101196 19663454 ~ 19715690 (+) False XLOC_035573
TCONS_00069731 mRNA upstream 56964 18464235 ~ 18488221 (+) True XLOC_035557
TCONS_00069729 mRNA upstream 58634 18460807 ~ 18486551 (+) False XLOC_035557
TCONS_00069730 mRNA upstream 58804 18463797 ~ 18486381 (+) False XLOC_035557
TCONS_00069727 mRNA upstream 379508 18044257 ~ 18165677 (+) False XLOC_035555
TCONS_00069728 mRNA upstream 394266 18101608 ~ 18150919 (+) True XLOC_035555
TCONS_00069736 mRNA downstream 26293 18588551 ~ 18601241 (+) False XLOC_035559
TCONS_00069737 mRNA downstream 26332 18588590 ~ 18593534 (+) True XLOC_035559
TCONS_00069738 mRNA downstream 53680 18615938 ~ 18623104 (+) True XLOC_035560
TCONS_00069739 mRNA downstream 62400 18624658 ~ 18647363 (+) True XLOC_035561
TCONS_00069741 mRNA downstream 268501 18830759 ~ 18840694 (+) True XLOC_035564
TCONS_00069707 other upstream 1448120 17087060 ~ 17097065 (+) True XLOC_035542
TCONS_00069704 other upstream 1471814 17069577 ~ 17073371 (+) False XLOC_035540
TCONS_00069701 other upstream 1734932 16772174 ~ 16810253 (+) True XLOC_035537
TCONS_00069690 other upstream 1856723 16676937 ~ 16688462 (+) False XLOC_035532
TCONS_00069685 other upstream 2465392 16023470 ~ 16079793 (+) False XLOC_035526
TCONS_00069740 other downstream 107979 18670237 ~ 18670362 (+) True XLOC_035562
TCONS_00069742 other downstream 461003 19023261 ~ 19023377 (+) True XLOC_035565
TCONS_00069748 other downstream 941769 19504027 ~ 19509241 (+) True XLOC_035569
TCONS_00069759 other downstream 1389475 19951733 ~ 19952380 (+) False XLOC_035578
TCONS_00069760 other downstream 1389519 19951777 ~ 19952379 (+) True XLOC_035578

Expression Profile

//