XLOC_035564 (mpnd)


Basic Information

Item Value
gene id XLOC_035564
gene name mpnd
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 18830759 ~ 18840694 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069741
CCACAAACACCGCTAATTTATAAAAGGGAGTAAATGACAAGGACGGGTAGGAGGGAGAAAGGGGAGGGGAATTGACATTAAAGAAACACTACACAAGGAAActacactgcacacacacacacgccttcattttatgtttttgaataacAGCCTGGCGGAGAGTGTCTGTCCGCACTGAAGTGTTTTATTAGCACGGCGGAACAGAAGTGACGGAAAGAAACATCAGCTCAGTCTGTGgagcagtttcagctcaaagcGCTTTCCGACGATTATCGCGAAATGGGCTCAGAGCCGCCCTCATCTCCTCAGGTGGTGGAGGAAGGAGCAGATGAGGAGGATGAGGAGCTGAGTGGGGCTGAAGATGCAGACCTGAGATCCTCCTCTGGAAGAGGTTCACTTCTGACCAGGAGAGGCATCACTTTAAGAGTCCTGCTGAAGGATGGTCTTGTGGAGCCTGGAGATGGAGTTCTGTCCATACACTACCTGGGTAAAAAGTTTGTTGGAGATCTTCTGAATGATGGGAAGATTCGTTGGGTGGAGACCGGGCAGATCTTTAACTCTCCAAGCGCGTGGGCCACACACTGTAAACGCCTGGTGAACCCGGCCAAAAAATCTGGCTGTGGCTGGGCATCGGTGCGATACCGGGGACAGAAACTGGTCCAGTACAAAACCACCTGGCTACACAAATACCAGCCCAGTGCTGACATGAGTCTAATAAGTGAAGGAGAAGATGATGAGATgggagatgatgatgaagaggaagGGAAAACGACCATTCCAGTAGAGGACAAGAATAAAAAGTCCAAACCTGAGCTGCACGAGATTGGCCTGACGCAgagaagagacagagagagaattCCAGTCAGGTACTGCACTCTTGGCACCAGAGATGCCGCAAGGGATCCTCACACCCTTGTCGAACTGTCTGCCTTTTCAGCAATCAACCGCTTCCAGCCTTTTAATGTAGCCGTTTCCAGCAATGTTCTGCTTCTAATGGATTTCCACTGTCACCTGACCTCAAGTGAGGTGGTGGGGTATTTAGGAGGTCGTtgggacacaaacacacaatTGCTTACAGTCCTGCGCGCATTTCCATGCCGCACACGATTGGCTGATAAAGATGCCGCTCCAGCTGTCGAAGAAGAGATTTGTCAGAATCTCTTCATGCGTGGCCTGTCATTGGTGGGATGGTATCACAGTCACCCACGAGGCCCCGCCCTTCCGTCTCTACAGGACATTGATTCGCAGATGGATCACCAGCTCCGCCTACAAGGCAGCAGTAACGGTTTCCAGCCCTGTCTAGGGATTATCTGTGGACCCTATTACCATGGTAACCAAGGtgtggcctccacaatcaccccATTCTGGGTAGTGCCTCCTCCTGAGCAACGACCGAATGATCACGGGATCCCAGTGGCGGTAGAGGTCACATATGTGCAGGACAACTTCCTCACTACAGACGTGCTCAACGAGATGATGCTGTTGGTGGAGTTTTATCGGTCTGCTCCTGACCTGGTGCAGTTCAGTCAGATGTGGAGCCCTAATACCTCAATACTCGACAAAATCAAGGCTTCTCTGAGTGGCCACGCACCCAAAGACCAGGCGTACGCACAGATCCTGGAGCATGTGTACAACCAACTGCGCAACACTCAGTGACCCGAGTGCTTTATGTCTGTGCAATGTGCATTAGTGTTAAGCTGTAGAACTGTTGACTTGGGACCTCCTGCCCTGTGCATTACCATCTGTGCACTGttatactgtatatgaaatgCCTTCGTGGAGGATATATCATATATGCTTCCGTCCAAACTGTTGCCTTTAGGACTGTTAGGTCTGTATCACTGGCTGTGGTTTACGCGATTCTGCCATATCTGTGCTGTGAAATTTGTCTTCCTCTGTGGTAGAAATGTCTCGGTGGGTAGTTACGAAAGAGAAGACGGGTAACTTGTGATCTCTTTTGGCTAGTATTTATGCGTTCGTGTGATTAGATTTGTGCCAATATGGGATCGATGCCTTTTTTTCCCTGCTGAATACCTTAAAATATACACTGGAACAAGAAACAAAATGTGCGTTTGCTTCCTGCAACAATGTTTTTTCTAACTGTATAATTAAAAAACTGTTCATACTCTTACAAGTGAAA

Function

symbol description
mpnd Predicted to enable histone binding activity; peptidase activity; and transcription coactivator activity. Predicted to be involved in chromatin remodeling and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within proteolysis. Orthologous to human MPND (MPN domain containing).

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0006508 proteolysis biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0042393 histone binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-060929-1162 Predicted to enable histone binding activity; peptidase activity; and transcription coactivator activity. Predicted to be involved in chromatin remodeling and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within proteolysis. Orthologous to human MPND (MPN domain containing).

Ensembl:

ensembl_id ENSDARG00000061989

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069741 True 2140 mRNA 0.49 13 18830759 18840694

Neighbor

gene id symbol gene type direction distance location
XLOC_035563 NA coding upstream 97165 18709974 ~ 18733594 (+)
XLOC_035562 BX247907.1 coding upstream 160397 18670237 ~ 18670362 (+)
XLOC_035561 fsd1 coding upstream 183396 18624658 ~ 18647363 (+)
XLOC_035560 ccdc181 coding upstream 207655 18615938 ~ 18623104 (+)
XLOC_035559 prrg1 coding upstream 229518 18588551 ~ 18601241 (+)
XLOC_035565 CR376858.1 coding downstream 182567 19023261 ~ 19023377 (+)
XLOC_035566 NA coding downstream 387141 19227835 ~ 19232675 (+)
XLOC_035567 mpeg1.2 coding downstream 515378 19356072 ~ 19359834 (+)
XLOC_035568 npl coding downstream 649160 19489854 ~ 19500354 (+)
XLOC_035569 sec22bb coding downstream 663317 19504011 ~ 19512270 (+)
XLOC_035556 NA non-coding upstream 418731 18410984 ~ 18412028 (+)
XLOC_035551 NA non-coding upstream 862525 17962829 ~ 17968234 (+)
XLOC_035546 NA non-coding upstream 1423679 17368041 ~ 17407080 (+)
XLOC_035573 NA non-coding downstream 822760 19663454 ~ 19715690 (+)
XLOC_035576 NA non-coding downstream 839736 19680430 ~ 19682651 (+)
XLOC_035577 NA non-coding downstream 898309 19739003 ~ 19950333 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_03494576_03500309 MPND coding CI01000010 null 3494306 ~ 3500309 (-)
rainbow trout (Oncorhynchus mykiss) G427950 NA non-coding NC_048569.1 CM023223.2 65084259 ~ 65085437 (-)