CI01000010_03308058_03308511


Basic Information

Item Value
gene id CI01000010_03308058_03308511
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 3307482 ~ 3310347 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_03308058_03308511.mRNA
AAACACCTGGAGAAACAAACACATGTCAACACCCACCAACCATACACATATCCTCTCTACTCATAAAGCGTCTTCAATGGTTCTTTGCATGTTCAAGGTATCTATCAAGAAATGTATTGGGCTGAATGAGCTATGTTGGAGACTAAAAGAGCTCTTGATTTGTCATTATAGGTTCTTCAGATCAGTGTACTGTGTCTGGGTTCTAAAAGCACTGGAACATATAGCTTTCCTAAAGAACTACAGAATAAAAAGCTCTTTGTGGAACTTAAATTGGTCCTGCTATGAAATCCGACTATAAAAACCTTTTGGTTGTAATTGGAACCTTCATTTTTAAGAGTGAGGCTCTAAATGTCAGTTCATGAGAAACAGCGTGAATGAGAAAAGAACAATGACACCTAGATTTACGTGCTTTCCATTTAACAGCTACTGTTCACAGTTTTTTTTTTTTACAATTGGTTTTGGTCAAAAGTGCATTTCTCAATACCTACAGTTCACTTTTTAAAAGTCTTCAGACAGTCAGCACAACAGAAGTACATATAGATTAACTATAGATCTTTTTGCTATTGCATTTAATGACCACATCTTTCAAAACTCGTTATTTTTTCTTACTCACAGAGAACTATTTGCAAAACTTTACATATCTACACATTCTCAAAACTGTTAAATCATGTATGTTCAAATCAGTACAACAATCCGCAATATATACAGAAATTCCATAATGAGGAACTTTTAATATCTAAATAAAGATAAGAAAAACAACTACCACAGCCTCTAGCTGACAAAATTTTTGCTATGTCAATGTCGTTATAATCAATTCAAAAGAGCCTATCTTTGAAATGTCATGCCTGACTGAGATGGATTTTTCTAGGTGTATCAACAGATGAATGTTGATTAGCATTGTTATATTTCCATATTGGTGTAAATCTATTTGTTTAAAGGTGGATGTGTTGCACGGTTATGTGCAGACACATGTTTGTGTTTTACAGTATCAGAGCTACATTTTATGGTGTAATTACCATATGCAAATTGTAAGGCATGGTGAAGCATAAAATTTGTGATTTTCTCTTACTGCAGTACATATAACAATTAAAGAGCGGCCATTCTTGTTTCACTAAGGACTCCTGGTTTCCTAAAAAAAAAAATCTTTCTCAAAGTGTTTTGAAGAGTGTAAATGTTAACTAGATTATGGTAGAATGAGTTCATTTGTTTTGGTGATTTAAGTGCATTTGAGATGAATTGCTGTGTCAAGTTGGTCAAGGTAGCTGTAAAGAGTTTGGAGAAAGAAGTCTCAGTTTTGAGAAAGACACTTAATTGTAAAAAGAGTGTACAAACGCAGACCTGACAGCAAAAAGCTACATAAAGTAGCCTAATAAATCGAGGCATACTAGAGAAATAAAATGACATGTTGCAAGAGCTGCATTTGATAAAATAATGCCATAACTTAGAAATTAAATGTAATAATGATTAAAAGGCTGCAAGTAAAGTGATATTGCTGTCAATACGTAAATATTTCAAAGACAAATGAACCTCAACTACTGTAAAATGTGAACAATTATTAATTATTTAATTCTGTTGTTCCACCATCCGTACAGCTAGCCTTCAACACAACCCGAATTTCATGGGCAAAATCAAGTCATGACGAACAACTCTCTAAATCATGTCTAAATTAAAAAAATATGAATGTAAATTTCTTTAATTACATAAGCGGAATCCCTCATTTAAGAACAATTATAACACGTCAACAATGAACAATATTATAAGACTAATATACTTTAGAGTAAAAACGCCACAATTCAGGGGAGCGTGCAGAATCAAACCCATCATCGCAACACTGAGATGGAGAGGAAAACTAGTACTACAATCAAGAAGAGAAGCTTTTCATTAGATAAACCAGCATACTTACCGATAACAGCCACGGGAAACGATCTGATCCCTGATCTGACATCCTTAAGACAACTGTGTCCAAACCCCCAACAACTAACCCCCCACCCCAACGTACACAACGACACCTGTCCCCGGGTAAAAAACACCGCGCGACAAAGCTCGTCTATGCTGCTCGTGAACAAATGGCATTCCCGACTTCGTCCTGCAGCCGCTGTATCCCCCTTCGGACAGCCTTCCAGAATCCAAGAAGTCGTTTTGAATAAGCGGGGATAAATGTCTAACAAATGATGCCAAAAAACAGTCCACGCCAGCGCAACCAGCTGTGCCTTATGAAAACGTGTCTGTCTGGGCTGGAAACATTTGCCTTATCAATCACCTACCGCTACAATAGTTTATTCAGTGCTGCGCCAGTAGAATGTACACGCTCCTGAGCGCGTGGACAAAAAGGCACGTTCGTTTGTTTGGTGCGCGCGTCGCTTCCTCCGATTTGAGTCCAGCCTTTGGAATCCGTTAAAAGAAACTCTTATTGTTCGGGAGAAATGTAATATTTCCTGCAATCCCCGGCGTGTAGCCCGCGGCGTTTGGTCTGACTGAGAGAGAAAGATCACGCGTTTGCTATCTCAGCGCTGTTGTAAGTCTGTCACCCACAGCTATTGAAACGCAAGTCAATGCCAAAACCTGACGCAGAATAGAGATGCAGACTGGAGCGGAATTAATTTGTTGTTAATCATTTGAGGTCAGGAAATTCATCAGCGATACTTAGTTGAGTGGATTGGTCCTGTATAGACGTGCAAGTGGCAAAGTAAGTGAATTTGAGATCAAAAGAGTGAGCTTAAGCTTTAAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_03308058_03308511.mRNA True 2733 mRNA 0.38 2 3307482 3310347

Neighbor

gene id symbol gene type direction distance location
CI01000010_03204475_03207149 MPEG1.2 coding downstream 100333 3204435 ~ 3207149 (-)
CI01000010_03109809_03114298 NPL coding downstream 193184 3109803 ~ 3114298 (-)
CI01000010_03101723_03103968 SEC22BB, SEC22B, SEC22B.S, SEC22B.L, S22BB coding downstream 203324 3100588 ~ 3104158 (-)
CI01000010_03033615_03059357 NOTCH2 coding downstream 248125 3032384 ~ 3059357 (-)
CI01000010_03025386_03030144 SLC35A3A, SLC35A3 coding downstream 277203 3024271 ~ 3030279 (-)
CI01000010_03494576_03500309 MPND coding upstream 183959 3494306 ~ 3500309 (-)
CI01000010_03517080_03524389 FSD1 coding upstream 206513 3516860 ~ 3524389 (-)
CI01000010_03527436_03530341 NA coding upstream 217061 3527408 ~ 3530359 (-)
CI01000010_03544215_03547481 PRRG1 coding upstream 233173 3543520 ~ 3547481 (-)
CI01000010_03557384_03566580 TAB3 coding upstream 246585 3556932 ~ 3567714 (-)
G62536 NA non-coding downstream 31419 3275088 ~ 3276063 (-)
G62513 NA non-coding downstream 98749 3178844 ~ 3208733 (-)
G62476 NA non-coding downstream 115117 3188531 ~ 3192365 (-)
G62507 NA non-coding downstream 136759 3170523 ~ 3170723 (-)
G62506 NA non-coding downstream 137053 3170165 ~ 3170429 (-)
G62616 NA non-coding upstream 56888 3367235 ~ 3388238 (-)
G62596 NA non-coding upstream 80989 3391336 ~ 3436108 (-)
G62636 NA non-coding upstream 91960 3402307 ~ 3402818 (-)
G62648 NA non-coding upstream 126351 3436698 ~ 3436928 (-)
G62650 NA non-coding upstream 127999 3438346 ~ 3438580 (-)
G61965 NA other downstream 1762431 1424425 ~ 1545051 (-)
G61888 NA other downstream 2061464 1244469 ~ 1246018 (-)
G61045 NA other downstream 2731971 572753 ~ 575511 (-)
CI01000010_03890095_03899058 SSBP3B, SSBP3, SSBP2 other upstream 579722 3890069 ~ 3899058 (-)
G64237 NA other upstream 919603 4229950 ~ 4236416 (-)
CI01000010_04612793_04613017 SMIM15 other upstream 1302149 4612460 ~ 4613135 (-)
G64564 NA other upstream 1738808 5049155 ~ 5242926 (-)

Expression


Co-expression Network