RNA id: CI01000010_05151648_05156807.mRNA



Basic Information


Item Value
RNA id CI01000010_05151648_05156807.mRNA
length 1217
RNA type mRNA
GC content 0.47
exon number 5
gene id CI01000010_05151648_05156807
representative True

Chromosome Information


Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 5151386 ~ 5157078 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGAGCACAAGCTCCATTTTGGTGGGAAAGGGGTACGAGAGGCCTCAATGCGTTTAAGTGGACTAGTTTTGTATTTTTGGATGTTTTTGAGACTTTCAGATAAGTGTGATGCCCTGCTCGGAGTCACCTAGTGTCATCATCCGTCAGTGCAGAGGACTGTGTGTGTTTTTGAAGGGTCACTCTCTTTCCTCTCTCCATCTTTTTCTCTCATTCTCGCTTTCATTGGATTTGACAGGTAAAGGAAACAGAGCACCAGAGCATGACAGCTAACAATGACCCTCTTCTCCTATTACACACACGCATACACACACATTCAACCCTTTGGTGGTCACACCCTCTTTCTTCATCTAGAGCAAACACTTAGAGCCAGTTTAATGGGTCTACAGGCAGCTTTCCGCCCAATCACAGCTCACAGGCTCATAAGAATGTGGCACCTGCTGTCAGGAGTGGATGTGATGCTGACAGCGGCAGTCAAAGAAACACTTCCCCTAACAAACGTGCCGTACGTCCTTAAGTCGCAAATGAAAGGGAAAGGAGAGGGAGAGTGTGGGCGAAAGAGAAGAGAAACGTCTCGTTTTATTTTTATGTGTCTCCGTCGATGCAAAGACTCGCCGGGACACAAAGGAAGCCATTACTGCTTACCATTTGTTGAATTCTCTGGTGCCAGAAAACTGACAGACTGCAAACACAAAGATATGTACCTTGGGCAGGCGTTTGCTGCGGGCTCAGATTGTGTACTATTAGCTGGTGTGGTAATTCAAGAGCAGGAGATACTGGGTGTGTTGATGCTGTCAGAGAGACAGCTCAGGGACTGGGGTCTGTGTCTGCATGTCTGCCTGGCATTCAAAGTCCCAGCAGTGCCTGGCCTCTTTGCCGCCATTCCAGTTCCGGTCCCCAAGCTGCCACTAACGATCACTCGGCCTGCTCCAGCACACTTAACATGCAGACCATGCTAAAAACGCTGCGGCGAGACAGACACAGTCACGTAAAATCCAAACCACACATACACAATCTGAATATAAGACTACATGACAGAGAGGGTCTTACATAAGCAAAACAGTCAGCATTGCACTATTTCGATCTCTAGAACACAGAATTTTGCACACACCATTGTCGTACTCGTTTCCATCAAAGAGAGCTCACCGATGATATGTCTCATATCACTGGAACATACTGTAAATACACTTCAATATCATAAATGCTAAAAGGGCCAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU73164 lncRNA downstream 377688 4772213 ~ 4773698 (-) True G64253
TU73359 lncRNA downstream 404100 4745243 ~ 4747286 (-) True G64436
TU73349 lncRNA downstream 406624 4724817 ~ 4744762 (-) True G64428
TU73135 lncRNA downstream 458769 4690272 ~ 4692617 (-) True G64231
TU73160 lncRNA downstream 470154 4680664 ~ 4681232 (-) True G64249
TU73625 lncRNA upstream 223663 5380741 ~ 5381384 (-) True G64685
TU73637 lncRNA upstream 253342 5410420 ~ 5410653 (-) True G64694
TU73647 lncRNA upstream 306606 5463684 ~ 5464065 (-) True G64704
TU73650 lncRNA upstream 310427 5467505 ~ 5467730 (-) True G64707
TU73651 lncRNA upstream 311229 5468307 ~ 5468634 (-) True G64708
CI01000010_04997746_05004248.mRNA mRNA downstream 147138 4997386 ~ 5004248 (-) True CI01000010_04997746_05004248
CI01000010_04958548_04988116.mRNA mRNA downstream 162466 4957759 ~ 4988920 (-) True CI01000010_04958548_04988116
CI01000010_04777992_04782638.mRNA mRNA downstream 368714 4777864 ~ 4782672 (-) True CI01000010_04777992_04782638
CI01000010_04631540_04638983.mRNA mRNA downstream 512379 4631478 ~ 4639007 (-) True CI01000010_04631540_04638983
CI01000010_04612793_04613017.mRNA mRNA downstream 538251 4612460 ~ 4613135 (-) False CI01000010_04612793_04613017
CI01000010_05320989_05321993.mRNA mRNA upstream 163847 5320925 ~ 5323026 (-) True CI01000010_05320989_05321993
CI01000010_05426981_05432228.mRNA mRNA upstream 269903 5426981 ~ 5432228 (-) True CI01000010_05426981_05432228
CI01000010_05433471_05438881.mRNA mRNA upstream 276324 5433402 ~ 5438881 (-) True CI01000010_05433471_05438881
CI01000010_05440213_05449232.mRNA mRNA upstream 283103 5440181 ~ 5449232 (-) True CI01000010_05440213_05449232
CI01000010_05449676_05450653.mRNA mRNA upstream 292502 5449580 ~ 5450653 (-) True CI01000010_05449676_05450653
TU73132 other downstream 537830 4613485 ~ 4613556 (-) True G64230
TU73142 other downstream 914970 4229950 ~ 4236416 (-) False G64237
TU72970 other downstream 1251475 3899741 ~ 3899911 (-) False G64080
TU72971 other downstream 1251475 3899741 ~ 3899911 (-) True G64080
TU71288 other downstream 1619734 3531516 ~ 3531652 (-) True G62599
TU73846 other upstream 759179 5916257 ~ 5917011 (-) True G64877
TU73887 other upstream 936611 6093689 ~ 6096480 (-) False G64918
TU74496 other upstream 2506613 7663691 ~ 7672343 (-) False G65453
TU74478 other upstream 2685558 7842636 ~ 7873650 (-) True G65441
TU76444 other upstream 3484612 8641690 ~ 8674897 (-) True G67099

Expression Profile