RNA id: TU73625


Basic Information

Item Value
RNA id TU73625
length 613
lncRNA type intronic
GC content 0.32
exon number 2
gene id G64685
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 5380741 ~ 5381384 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGTTTTGTCGTGATCAGGACTTAATTTTCTCGTCATCTCGACATAAAAGTTCTTTTTACAGTGATTGATTCTGAAACACACTGTACCCGGATTCTACTGTTGCTATAGTAACGAACACAACTTTCACGCGCATCTGATCGACGGATAAATCATGCGCTCTTATATCTTGTGGATATTTCAGCAAAATGTTTACTTCACTTAATAATAAAGTTTACAATAAATAAATACATATAGGCTAATCAATCACTGTTCAATAAATGTACGCTAAACATTTTATTTGTGTAATTAACATGTTTAATAATCAACAGAGCATTCAACATCTCAAGCGCAGCCAGAGTGCCTTCAGAAAGATGCCAAATTATTCTATAATTCTAAAAATTATTAGATTAAACCCACTTTATTTTCCTCATTCGTTTGAAATAAAATTATATTACATAATGTTTTTGTTATTTTTATTCCTCATGTAGGATAGGCTGTGATATCATTAAACTGTCTTCCTCCAGCTTCCATTAAAAAGAGGTGCAATACTCCAGATTTCCAAAAAACAAAACTTTAATCCAGTTGATATAGGCTAAAACAATCTTGGGATGCTGTTTGAGAAGAGTGTTTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73164 lncRNA downstream 607043 4772213 ~ 4773698 (-) True G64253
TU73359 lncRNA downstream 633455 4745243 ~ 4747286 (-) True G64436
TU73349 lncRNA downstream 635979 4724817 ~ 4744762 (-) True G64428
TU73135 lncRNA downstream 688124 4690272 ~ 4692617 (-) True G64231
TU73160 lncRNA downstream 699509 4680664 ~ 4681232 (-) True G64249
TU73637 lncRNA upstream 29036 5410420 ~ 5410653 (-) True G64694
TU73647 lncRNA upstream 82300 5463684 ~ 5464065 (-) True G64704
TU73650 lncRNA upstream 86121 5467505 ~ 5467730 (-) True G64707
TU73651 lncRNA upstream 86923 5468307 ~ 5468634 (-) True G64708
TU73653 lncRNA upstream 89020 5470404 ~ 5470673 (-) True G64710
CI01000010_05320989_05321993.mRNA mRNA downstream 57715 5320925 ~ 5323026 (-) True CI01000010_05320989_05321993
CI01000010_05151648_05156807.mRNA mRNA downstream 223663 5151386 ~ 5157078 (-) True CI01000010_05151648_05156807
CI01000010_04997746_05004248.mRNA mRNA downstream 376493 4997386 ~ 5004248 (-) True CI01000010_04997746_05004248
CI01000010_04958548_04988116.mRNA mRNA downstream 391821 4957759 ~ 4988920 (-) True CI01000010_04958548_04988116
CI01000010_04777992_04782638.mRNA mRNA downstream 598069 4777864 ~ 4782672 (-) True CI01000010_04777992_04782638
CI01000010_05426981_05432228.mRNA mRNA upstream 45597 5426981 ~ 5432228 (-) True CI01000010_05426981_05432228
CI01000010_05433471_05438881.mRNA mRNA upstream 52018 5433402 ~ 5438881 (-) True CI01000010_05433471_05438881
CI01000010_05440213_05449232.mRNA mRNA upstream 58797 5440181 ~ 5449232 (-) True CI01000010_05440213_05449232
CI01000010_05449676_05450653.mRNA mRNA upstream 68196 5449580 ~ 5450653 (-) True CI01000010_05449676_05450653
CI01000010_05451275_05454147.mRNA mRNA upstream 69582 5450966 ~ 5454779 (-) True CI01000010_05451275_05454147
TU73495 other downstream 137815 5049155 ~ 5242926 (-) True G64564
TU73132 other downstream 767185 4613485 ~ 4613556 (-) True G64230
TU73142 other downstream 1144325 4229950 ~ 4236416 (-) False G64237
TU72970 other downstream 1480830 3899741 ~ 3899911 (-) False G64080
TU72971 other downstream 1480830 3899741 ~ 3899911 (-) True G64080
TU73846 other upstream 534873 5916257 ~ 5917011 (-) True G64877
TU73887 other upstream 712305 6093689 ~ 6096480 (-) False G64918
TU74496 other upstream 2282307 7663691 ~ 7672343 (-) False G65453
TU74478 other upstream 2461252 7842636 ~ 7873650 (-) True G65441
TU76444 other upstream 3260306 8641690 ~ 8674897 (-) True G67099

Expression Profile