CI01000010_05451275_05454147


Basic Information

Item Value
gene id CI01000010_05451275_05454147
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 5450966 ~ 5454779 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_05451275_05454147.mRNA
ACTTTCAGTATAATAATTCACTGAGCAATAGTATTTTTACCCTATCATTAAAAACATTGAGTACATTATTTTTTTTTATAAAGTGACATATAGTGCATTTATAAGAGAGGCACTCCCTCTGGGGTAATCTGGTGTTCTATGTCTTGCTCAGTGGAACAGTGTCACTCGCATGGATCAATCCATTTGTAGTCCATCCCAGGTGTTCAAAGTCAGACTCAATTCCCTAGGATTTTCTGCCCTCTATTGGACAATTGTGCATACAACAAAACAAAACAACAACAAAAAACCATGACGACGTGTTTCTTCTACTTTAGCTATTACAAAATAAACACCGCCTCTAAATCGACATGAAGTCATGGCAGTAAAACAGGAAGTGGAATTAAGCAATGCAGCTAAATACTGAAGGTGGATATTAGTAGGACATTAGAACATTTGGCGCCGTAACAAAGTAAGTAAAGACCTTTCGTTACTACTGTCTGACTTTAACTTAATATTTTCCGCTAAACCTACACATTAATTCAAACAGAGCTATAAAGGCTGGTTGTGATAGTAATGTTATGTACCTAATACATAAAGCATCTTGATTGTAGTGAAGTTATGGTTAACGTAATATCTTCTTTAATATTATAGACATGGCAGGCAGAAATCCATCTATCGTGGTAGTTGGCGCTGGTGTGGCAGGACTCGCCGCAGCCAAGAAGCTGAAAGAATACGGATTTAATGACGTCACGGTGCTGGAAGCCTCCGAGAAGGTCGGAGGAAGAGTAGCTTCTGAAACTCTAGGGAATACATGTGTTGATACTGGAGCACAATACATCCATGGGGCATCAGAAAAAAACCCAGTCTACTGTCTACTAAAAAAGTCAGGCCTTCTAAACCAGGTCCCTGAGATGGGCACTGAAGCATTTTACAGTAACAAGGGACACAAAGTGGATGCAGACTTCGCCAGACGTGCATATGAAGCTGGGGAGGACATCATTCAATACCGTGGCTTCAACACAGGAAGGAGTTTAGGTGAACACTATGCAGAAAAAACCCAAGGCGTGATTGACAGCTTGCAAGACAATGACAAGAAAACGAGAATGCAGAGTGTTTTTGCTTTGGTTGGCAAAGACATGCTGATTGACGTTGGAGCTTCAGACCTCCACAGGATCTCTCTTGACTCCTGGCAGTATTATATCAACATGGGTGACAGTCTCAATATTGCAGGTTTTATGTTTCAGCTTGTGGATCTGCTACTGGAGGGCTTCCCTAAGGAATGTTTGCTGCTAAAAAGAGAAGTTAGTAAGATCAAATGGGATGGAACCTTCTCTGTAGCCCCCTCTCCGACTCCCCCTCCTCATGATGATCCTCTCCGTGCTCACACTGAAGCTGGCTCTGATGAAAAAGTCCGCCAGTACCCAGTTTGCGTTGTCTGTGAGAATGGAGAAGAGATTCTAGCCGATCATGTAATAGTGACCATTTCTCTGGGTTGTCTAAAAGCTCAAGCTTCCAGCCTCTTCATCCCCAGTCTCCCAACCGAGAAAATAGAGGTCATCGATAAGCTGTGCTTTGGCAATATTGCCAAGATCTTTCTGGAGTATGAAGAGGCATTCTGGGAGAATGAAGATGGTTCTATCAGCCTCATTTATGAGGATGACACGCCTGTCTCAGTAGCCACCAATAAAATGCAGTGGCTCAGGAACATGCAGAACTTTTCTGTCCTGAGACCTAAAGAAAGGTTTGGCAATATCTTAATTGGTTGGTGTCCAGGAGACATAGCTGACCTGATTGAAACCATGCCAGATGACGAACTCTCAACTGCTATCACTGATCATCTCAAAATGTTCTTTGGTGAGGCAACGATGAAGACTCTTTATGGCACAGTGCAAGGAGCTCTACTGTCAGGAGACAGAGAGGCTGACAGACTGGCAGCACATTATAAGAAGACAGCAGCTCCCACTTCCACTACCTCACTGGACAAACAAGATTAGAGAGTTAAAATGTATTATCTAAAATTTAGACAAGTATCCAGTAACATCATCACAATTATAATGTGATGATGATGATGATGATGGTTCGACTGATGATGTGATCTCAACAAGCCTGCCCCCATGAGGCTTCTCCATGTAAAATAAAACAACTTAGGAGCAAAACTGTTCGAGGAAAAAAATGACTGGAATTTAGATTTTTACTGATGTATACTATACCTCTTTATATTATATAGGCTACGTTTTAGAAACAAACCAAATGTTTTTTTGTTTTTTTTGACGAGTTGAATTTCATACAATATTTTTAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_05451275_05454147.mRNA True 2282 mRNA 0.41 6 5450966 5454779

Neighbor

gene id symbol gene type direction distance location
CI01000010_05449676_05450653 NA coding downstream 313 5449580 ~ 5450653 (-)
CI01000010_05440213_05449232 SLC5A9 coding downstream 1734 5440181 ~ 5449232 (-)
CI01000010_05433471_05438881 NA coding downstream 12085 5433402 ~ 5438881 (-)
CI01000010_05426981_05432228 NA coding downstream 18738 5426981 ~ 5432228 (-)
CI01000010_05320989_05321993 NA coding downstream 127940 5320925 ~ 5323026 (-)
CI01000010_05508908_05511594 NA coding upstream 54000 5508779 ~ 5511704 (-)
CI01000010_05516002_05519888 NA coding upstream 61188 5515967 ~ 5519918 (-)
CI01000010_05538251_05562058 FNBP1L coding upstream 83002 5537781 ~ 5562058 (-)
CI01000010_05594817_05606739 ABL2 coding upstream 138852 5593631 ~ 5606739 (-)
CI01000010_05627867_05634808 SOAT1 coding upstream 171791 5626570 ~ 5634808 (-)
G64694 NA non-coding downstream 40313 5410420 ~ 5410653 (-)
G64685 NA non-coding downstream 69582 5380741 ~ 5381384 (-)
G64253 NA non-coding downstream 677268 4772213 ~ 4773698 (-)
G64436 NA non-coding downstream 703680 4745243 ~ 4747286 (-)
G64428 NA non-coding downstream 706204 4724817 ~ 4744762 (-)
G64704 NA non-coding upstream 8905 5463684 ~ 5464065 (-)
G64707 NA non-coding upstream 12726 5467505 ~ 5467730 (-)
G64708 NA non-coding upstream 13528 5468307 ~ 5468634 (-)
G64710 NA non-coding upstream 15625 5470404 ~ 5470673 (-)
G64712 NA non-coding upstream 17989 5472768 ~ 5472996 (-)
G64564 NA other downstream 208040 5049155 ~ 5242926 (-)
CI01000010_04612793_04613017 SMIM15 other downstream 837410 4612460 ~ 4613135 (-)
G64237 NA other downstream 1214550 4229950 ~ 4236416 (-)
CI01000010_03890095_03899058 SSBP3B, SSBP3, SSBP2 other downstream 1551055 3890069 ~ 3899058 (-)
CI01000010_03527436_03530341 NA other downstream 1919314 3527408 ~ 3530359 (-)
G64877 NA other upstream 461478 5916257 ~ 5917011 (-)
G64918 NA other upstream 638910 6093689 ~ 6096480 (-)
G65453 NA other upstream 2208912 7659435 ~ 7672343 (-)
CI01000010_07880416_07900104 NA other upstream 2387857 7880375 ~ 7900104 (-)
G67099 NA other upstream 3186911 8641690 ~ 8674897 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035520 paox1 coding NC_007119.7 CM002892.2 15239549 ~ 15250265 (+)