CI01000010_05449676_05450653


Basic Information

Item Value
gene id CI01000010_05449676_05450653
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 5449580 ~ 5450653 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_05449676_05450653.mRNA
ATGGCTCTAAATGCAATTGGCCAGCCGTGCAAGAGTTTATTTGGCTGTCTTCAGGCTGTTGTCACTCACAGGTGTTTGCAAGCCACATCCACATTTCACACCACAGCCTTTCAGTCAGACTCCAACAGAACCTGCGTGGTCCGCTTTGGGAGGCAGAAGTATGAGAGGATGTATCCAGTTCTGTTGGTGAGACCTGATGGGTCCACCATTAACATCAGATATAAAGAGCCTAAAAGAATAATGAAGATGCCTGTGGACATCACCACCCTCTCTGAGGAGGAGAGGAAAATCAGGATGCGGAAAAGAGAACCGAAGAGGGCAGCCAAACAGAAATTGGAGGATTTTGAGGATGATTTCAAAGTTGATGATTACAGTAAATTCTGGAAGAAGAAATGAATGGACTGATATAGTTGAATGTCACGTTAAGAGTATTTATGATGGCTCTCATGTACAAAATTACAGTTTTGTTTTATAAGTCACTCTGCAACTAAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process

KEGG:

id description
K17436 MRPL55; large subunit ribosomal protein L55

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_05449676_05450653.mRNA True 492 mRNA 0.43 3 5449580 5450653

Neighbor

gene id symbol gene type direction distance location
CI01000010_05440213_05449232 SLC5A9 coding downstream 348 5440181 ~ 5449232 (-)
CI01000010_05433471_05438881 NA coding downstream 10699 5433402 ~ 5438881 (-)
CI01000010_05426981_05432228 NA coding downstream 17352 5426981 ~ 5432228 (-)
CI01000010_05320989_05321993 NA coding downstream 126554 5320925 ~ 5323026 (-)
CI01000010_05151648_05156807 NA coding downstream 292502 5151386 ~ 5157078 (-)
CI01000010_05451275_05454147 NA coding upstream 313 5450966 ~ 5454779 (-)
CI01000010_05508908_05511594 NA coding upstream 58126 5508779 ~ 5511704 (-)
CI01000010_05516002_05519888 NA coding upstream 65314 5515967 ~ 5519918 (-)
CI01000010_05538251_05562058 FNBP1L coding upstream 87128 5537781 ~ 5562058 (-)
CI01000010_05594817_05606739 ABL2 coding upstream 142978 5593631 ~ 5606739 (-)
G64694 NA non-coding downstream 38927 5410420 ~ 5410653 (-)
G64685 NA non-coding downstream 68196 5380741 ~ 5381384 (-)
G64253 NA non-coding downstream 675882 4772213 ~ 4773698 (-)
G64436 NA non-coding downstream 702294 4745243 ~ 4747286 (-)
G64428 NA non-coding downstream 704818 4724817 ~ 4744762 (-)
G64704 NA non-coding upstream 13031 5463684 ~ 5464065 (-)
G64707 NA non-coding upstream 16852 5467505 ~ 5467730 (-)
G64708 NA non-coding upstream 17654 5468307 ~ 5468634 (-)
G64710 NA non-coding upstream 19751 5470404 ~ 5470673 (-)
G64712 NA non-coding upstream 22115 5472768 ~ 5472996 (-)
G64564 NA other downstream 206654 5049155 ~ 5242926 (-)
CI01000010_04612793_04613017 SMIM15 other downstream 836024 4612460 ~ 4613135 (-)
G64237 NA other downstream 1213164 4229950 ~ 4236416 (-)
CI01000010_03890095_03899058 SSBP3B, SSBP3, SSBP2 other downstream 1549669 3890069 ~ 3899058 (-)
CI01000010_03527436_03530341 NA other downstream 1917928 3527408 ~ 3530359 (-)
G64877 NA other upstream 465604 5916257 ~ 5917011 (-)
G64918 NA other upstream 643036 6093689 ~ 6096480 (-)
G65453 NA other upstream 2213038 7659435 ~ 7672343 (-)
CI01000010_07880416_07900104 NA other upstream 2391983 7880375 ~ 7900104 (-)
G67099 NA other upstream 3191037 8641690 ~ 8674897 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035521 zgc:171480 coding NC_007119.7 CM002892.2 15251448 ~ 15253800 (+)